MirGeneDB ID | Gga-Mir-1-P1 |
Family name |
MIR-1 (all species) |
Species |
Chicken (Gallus gallus) |
MiRBase ID |
gga-mir-1a-2
|
Paralogues |
Gga-Mir-1-P2
Gga-Mir-1-P3
Gga-Mir-1-P4
|
Orthologues |
Aae-Mir-1
Aca-Mir-1-P1
Aga-Mir-1
Agr-Mir-1
Ami-Mir-1-P1
Asu-Mir-1
Bfl-Mir-1
Bge-Mir-1
Bla-Mir-1
Bta-Mir-1-P1
Cbr-Mir-1
Cel-Mir-1
Cfa-Mir-1-P1
Cin-Mir-1
Cja-Mir-1-P1
Cli-Mir-1-P1
Cmi-Mir-1-P1
Cpi-Mir-1-P1
Cpo-Mir-1-P1
Cte-Mir-1
Dan-Mir-1
Dgr-Mir-1
Dlo-Mir-1
Dma-Mir-1
Dme-Mir-1
Dmo-Mir-1
Dno-Mir-1-P1
Dpu-Mir-1
Dre-Mir-1-P1
Dsi-Mir-1
Dya-Mir-1
Eba-Mir-1
Eca-Mir-1-P1
Egr-Mir-1
Esc-Mir-1
Ete-Mir-1-P1
Gja-Mir-1-P1
Gmo-Mir-1-P1
Gpa-Mir-1
Gsa-Mir-1
Gsp-Mir-1
Hme-Mir-1
Hmi-Mir-1
Hru-Mir-1
Hsa-Mir-1-P1
Isc-Mir-1
Laf-Mir-1-P1
Lan-Mir-1
Lch-Mir-1-P1
Lgi-Mir-1
Lhy-Mir-1
Llo-Mir-1
Loc-Mir-1-P1
Mal-Mir-1-P1
Mdo-Mir-1-P1
Mgi-Mir-1
Mml-Mir-1-P1
Mmr-Mir-1-P1
Mmu-Mir-1-P1
Mom-Mir-1
Mun-Mir-1-P1
Neu-Mir-1-P1
Oan-Mir-1-P1
Obi-Mir-1
Ocu-Mir-1-P1
Ofu-Mir-1
Ovu-Mir-1
Pab-Mir-1-P1
Pau-Mir-1
Pbv-Mir-1-P1
Pca-Mir-1
Pcr-Mir-1
Pdu-Mir-1
Pfl-Mir-1
Ple-Mir-1
Pma-Mir-1-o1
Pmi-Mir-1
Rno-Mir-1-P1
Rph-Mir-1
Sha-Mir-1-P1
Sko-Mir-1
Sma-Mir-1
Sne-Mir-1
Snu-Mir-1
Spt-Mir-1-P1
Spu-Mir-1
Sro-Mir-1
Sto-Mir-1-P1
Tca-Mir-1
Tgu-Mir-1-P1
Tni-Mir-1-P1
Tur-Mir-1
War-Mir-1
Xbo-Mir-1
Xla-Mir-1-P1a
Xla-Mir-1-P1b
Xtr-Mir-1-P1
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (Gallus_gallus.GRCg6a) |
2: 102518401-102518461 [-]
UCSC
Ensembl
|
Clustered miRNAs (< 50kb from Mir-1-P1) |
Mir-133-P1-v1
2: 102515277-102515336 [-]
UCSC
Ensembl
Mir-133-P1-v2
2: 102515277-102515336 [-]
UCSC
Ensembl
Mir-1-P1
2: 102518401-102518461 [-]
UCSC
Ensembl
|
Seed |
GGAAUGU |
Precursor (pre-Mir +30nt flank) |
UGAGCAACUCUACAUGUACCUGCUCAGAGCACAUACUUCUUUAUGUACCCAUAUGAACAUACAAUGCUAUGGAAUGUAAAGAAGUAUGUAUUUUUGGCAGGCGCAGAACGACCAGUAAGAG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UGAGCAACUCUACAUGUA--| C C AC UGAACA
CCUGCU AGAG ACAUACUUCUUUAUGU CCAUA U
GGACGG UUUU UGUAUGAAGAAAUGUA GGUAU A
GAGAAUGACCAGCAAGACGC^ U A A- CGUAAC
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Ad |
Ad |
Ad |
Br |
Br |
Ce |
Ce |
Ce |
Ce |
Gg |
He |
He |
Hy |
Hy |
Ki |
Ki |
Li |
Li |
Lu |
Lu |
Ov |
Pr |
Pr |
Sc |
Sc |
Sp |
Sp |
Te |
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Star sequence |
Gga-Mir-1-P1_5p* |
mirBase accession | MIMAT0026510 |
Sequence |
0- ACAUACUUCUUUAUGUACCCAUA -23
Get sequence
|
Proposed targets |
TargetScanVert: gga-miR-1a-2-5p
miRDB: MIMAT0026510
|
Mature sequence |
Gga-Mir-1-P1_3p |
mirBase accession | MIMAT0001127 |
Sequence |
39- UGGAAUGUAAAGAAGUAUGUAU -61
Get sequence
|
Proposed targets |
TargetScanVert: gga-miR-1a-3p
miRDB: MIMAT0001127
|