Mir-1-P1

MirGeneDB ID

Rno-Mir-1-P1

Family name

MIR-1 (all species)

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-1

Paralogues

Rno-Mir-1-P2 Rno-Mir-1-P3

Orthologues

Aae-Mir-1 Aca-Mir-1-P1 Aga-Mir-1 Agr-Mir-1 Ami-Mir-1-P1 Asu-Mir-1 Bfl-Mir-1 Bge-Mir-1 Bla-Mir-1 Bta-Mir-1-P1 Cbr-Mir-1 Cel-Mir-1 Cfa-Mir-1-P1 Cin-Mir-1 Cja-Mir-1-P1 Cli-Mir-1-P1 Cmi-Mir-1-P1 Cpi-Mir-1-P1 Cpo-Mir-1-P1 Cte-Mir-1 Dan-Mir-1 Dgr-Mir-1 Dlo-Mir-1 Dma-Mir-1 Dme-Mir-1 Dmo-Mir-1 Dno-Mir-1-P1 Dpu-Mir-1 Dre-Mir-1-P1 Dsi-Mir-1 Dya-Mir-1 Eba-Mir-1 Eca-Mir-1-P1 Egr-Mir-1 Esc-Mir-1 Ete-Mir-1-P1 Gga-Mir-1-P1 Gja-Mir-1-P1 Gmo-Mir-1-P1 Gpa-Mir-1 Gsa-Mir-1 Gsp-Mir-1 Hme-Mir-1 Hmi-Mir-1 Hru-Mir-1 Hsa-Mir-1-P1 Isc-Mir-1 Laf-Mir-1-P1 Lan-Mir-1 Lch-Mir-1-P1 Lgi-Mir-1 Lhy-Mir-1 Llo-Mir-1 Loc-Mir-1-P1 Mal-Mir-1-P1 Mdo-Mir-1-P1 Mgi-Mir-1 Mml-Mir-1-P1 Mmr-Mir-1-P1 Mmu-Mir-1-P1 Mom-Mir-1 Mun-Mir-1-P1 Neu-Mir-1-P1 Oan-Mir-1-P1 Obi-Mir-1 Ocu-Mir-1-P1 Ofu-Mir-1 Ovu-Mir-1 Pab-Mir-1-P1 Pau-Mir-1 Pbv-Mir-1-P1 Pca-Mir-1 Pcr-Mir-1 Pdu-Mir-1 Pfl-Mir-1 Ple-Mir-1 Pma-Mir-1-o1 Pmi-Mir-1 Rph-Mir-1 Sha-Mir-1-P1 Sko-Mir-1 Sma-Mir-1 Sne-Mir-1 Snu-Mir-1 Spt-Mir-1-P1 Spu-Mir-1 Sro-Mir-1 Sto-Mir-1-P1 Tca-Mir-1 Tgu-Mir-1-P1 Tni-Mir-1-P1 Tur-Mir-1 War-Mir-1 Xbo-Mir-1 Xla-Mir-1-P1a Xla-Mir-1-P1b Xtr-Mir-1-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(rn6)

chr18: 2054945-2055005 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-1-P1)

Mir-133-P1-v1 chr18: 2052491-2052550 [-] UCSC Ensembl
Mir-133-P1-v2 chr18: 2052491-2052550 [-] UCSC Ensembl
Mir-1-P1 chr18: 2054945-2055005 [-] UCSC Ensembl

Seed

GGAAUGU

Precursor
(pre-Mir +30nt flank)

ACAAUCGGCACAAUAGUGCCUACUCAGAGCACAUACUUCUUUAUGUACCCAUAUGAACAUAGAAUGCUAUGGAAUGUAAAGAAGUGUGUAUUUUGGGUAGGUAAUGUCCGCCAAGAAGAAG

Get precursor sequence

Structure

        10          20        30        40        50        60
ACAAUCGGCACAAUAGU--|           C                AC     UGAACA 
                   GCCUACUCAGAG ACAUACUUCUUUAUGU  CCAUA      U
                   UGGAUGGGUUUU UGUGUGAAGAAAUGUA  GGUAU      A
GAAGAAGAACCGCCUGUAA^           A                A-     CGUAAG 
 .       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Star sequence

Rno-Mir-1-P1_5p* (predicted)

mirBase accession

MIMAT0003162

Sequence

0- ACAUACUUCUUUAUGUACCCAUA -23

Get sequence

Proposed targets

microrna.org: MIMAT0003162
TargetScanVert: rno-miR-1-5p
miRDB: MIMAT0003162

Mature sequence

Rno-Mir-1-P1_3p

mirBase accession

MIMAT0003125

Sequence

39- UGGAAUGUAAAGAAGUGUGUAU -61

Get sequence

Proposed targets

microrna.org: MIMAT0003125
TargetScanVert: rno-miR-1-3p
miRDB: MIMAT0003125