MirGeneDB 2.1
MirGeneDB ID

Rno-Mir-1-P1

Family name MIR-1 (all species)
Seed GGAAUGU
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-1
Paralogues Rno-Mir-1-P2  Rno-Mir-1-P3 
Orthologues Aae-Mir-1  Aca-Mir-1-P1  Ami-Mir-1-P1  Asu-Mir-1  Bfl-Mir-1  Bge-Mir-1  Bla-Mir-1  Bta-Mir-1-P1  Cbr-Mir-1  Cel-Mir-1  Cfa-Mir-1-P1  Cgi-Mir-1  Cin-Mir-1  Cli-Mir-1-P1  Cmi-Mir-1-P1  Cpi-Mir-1-P1  Cpo-Mir-1-P1  Cte-Mir-1  Dan-Mir-1  Dma-Mir-1  Dme-Mir-1  Dmo-Mir-1  Dno-Mir-1-P1  Dpu-Mir-1  Dre-Mir-1-P1  Dsi-Mir-1  Dya-Mir-1  Esc-Mir-1  Ete-Mir-1-P1  Gga-Mir-1-P1  Gja-Mir-1-P1  Gmo-Mir-1-P1  Hme-Mir-1  Hsa-Mir-1-P1  Isc-Mir-1  Lan-Mir-1  Lch-Mir-1-P1  Lgi-Mir-1  Loc-Mir-1-P1  Mal-Mir-1-P1  Mdo-Mir-1-P1  Mml-Mir-1-P1  Mmu-Mir-1-P1  Mun-Mir-1-P1  Oan-Mir-1-P1  Obi-Mir-1  Ocu-Mir-1-P1  Ovu-Mir-1  Pbv-Mir-1-P1  Pfl-Mir-1  Pma-Mir-1-o1  Pmi-Mir-1  Sha-Mir-1-P1  Sko-Mir-1  Spt-Mir-1-P1  Spu-Mir-1  Sto-Mir-1-P1  Tca-Mir-1  Tgu-Mir-1-P1  Tni-Mir-1-P1  Xbo-Mir-1  Xla-Mir-1-P1a  Xla-Mir-1-P1b  Xtr-Mir-1-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(rn6)		 chr18: 2054945-2055005 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1-P1)		 Mir-133-P1-v1 chr18: 2052491-2052550 [-] UCSC Ensembl
Mir-133-P1-v2 chr18: 2052491-2052550 [-] UCSC Ensembl
Mir-1-P1 chr18: 2054945-2055005 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACAAUCGGCACAAUAGUGCCUACUCAGAGCACAUACUUCUUUAUGUACCCAUAUGAACAUAGAAUGCUAUGGAAUGUAAAGAAGUGUGUAUUUUGGGUAGGUAAUGUCCGCCAAGAAGAAG
Get precursor sequence
Structure
        10          20        30        40        50        60
ACAAUCGGCACAAUAGU--|           C                AC     UGAACA 
                   GCCUACUCAGAG ACAUACUUCUUUAUGU  CCAUA      U
                   UGGAUGGGUUUU UGUGUGAAGAAAUGUA  GGUAU      A
GAAGAAGAACCGCCUGUAA^           A                A-     CGUAAG 
 .       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Ad Ad Br Br Br Ce Ce Ce Ce Co Co Co Co Dr Dr Du Du Du Du He He Hi Hi Il Il Je Je Ki Ki Ki Ki Li Li Li Li Me Me Mu Mu Mu Mu Mu Mu Mu Mu Ov Pa Pa St St St Te Ut Wh Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Star sequence

Rno-Mir-1-P1_5p* (predicted)
mirBase accessionMIMAT0003162
Sequence 
0- ACAUACUUCUUUAUGUACCCAUA -23
Get sequence
Proposed targets microrna.org: MIMAT0003162
TargetScanVert: rno-miR-1-5p
miRDB: MIMAT0003162
Mature sequence

Rno-Mir-1-P1_3p
mirBase accessionMIMAT0003125
Sequence 
39- UGGAAUGUAAAGAAGUGUGUAU -61
Get sequence
Proposed targets microrna.org: MIMAT0003125
TargetScanVert: rno-miR-1-3p
miRDB: MIMAT0003125