MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-1-P2

Family name MIR-1 (all species)
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-206
Paralogues Rno-Mir-1-P1  Rno-Mir-1-P3 
Orthologues Aae-Mir-1  Aca-Mir-1-P2  Aga-Mir-1  Agr-Mir-1  Ami-Mir-1-P2  Asu-Mir-1  Bfl-Mir-1  Bge-Mir-1  Bla-Mir-1  Bta-Mir-1-P2  Cbr-Mir-1  Cel-Mir-1  Cfa-Mir-1-P2  Cin-Mir-1  Cja-Mir-1-P2  Cli-Mir-1-P2  Cpi-Mir-1-P2  Cpo-Mir-1-P2  Cte-Mir-1  Dan-Mir-1  Dgr-Mir-1  Dlo-Mir-1  Dma-Mir-1  Dme-Mir-1  Dmo-Mir-1  Dno-Mir-1-P2  Dpu-Mir-1  Dre-Mir-1-P2a  Dre-Mir-1-P2b  Dsi-Mir-1  Dya-Mir-1  Eba-Mir-1  Eca-Mir-1-P2  Egr-Mir-1  Esc-Mir-1  Ete-Mir-1-P2  Gga-Mir-1-P2  Gja-Mir-1-P2e  Gja-Mir-1-P2f  Gmo-Mir-1-P2a  Gpa-Mir-1  Gsa-Mir-1  Gsp-Mir-1  Hme-Mir-1  Hmi-Mir-1  Hru-Mir-1  Hsa-Mir-1-P2  Isc-Mir-1  Laf-Mir-1-P2  Lan-Mir-1  Lch-Mir-1-P2  Lgi-Mir-1  Lhy-Mir-1  Llo-Mir-1  Loc-Mir-1-P2  Mal-Mir-1-P2a  Mdo-Mir-1-P2  Mgi-Mir-1  Mml-Mir-1-P2  Mmr-Mir-1-P2  Mmu-Mir-1-P2  Mom-Mir-1  Mun-Mir-1-P2  Oan-Mir-1-P2  Obi-Mir-1  Ocu-Mir-1-P2  Ofu-Mir-1  Ovu-Mir-1  Pab-Mir-1-P2  Pau-Mir-1  Pbv-Mir-1-P2  Pca-Mir-1  Pcr-Mir-1  Pdu-Mir-1  Pfl-Mir-1  Ple-Mir-1  Pma-Mir-1-o2  Pmi-Mir-1  Rph-Mir-1  Sha-Mir-1-P2  Sko-Mir-1  Sma-Mir-1  Sne-Mir-1  Snu-Mir-1  Spt-Mir-1-P2  Spu-Mir-1  Sro-Mir-1  Tca-Mir-1  Tgu-Mir-1-P2  Tni-Mir-1-P2a  Tur-Mir-1  War-Mir-1  Xbo-Mir-1  Xla-Mir-1-P2c  Xla-Mir-1-P2d  Xtr-Mir-1-P2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(rn6)		 chr9: 26791776-26791835 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1-P2)		 Mir-1-P2 chr9: 26791776-26791835 [+] UCSC Ensembl
Mir-133-P2-v1 chr9: 26795659-26795717 [+] UCSC Ensembl
Mir-133-P2-v2 chr9: 26795659-26795717 [+] UCSC Ensembl
Seed GGAAUGU
Precursor
(pre-Mir +30nt flank)		 
GGACCUCGGAGGACACCUCUUCCCCAGGCCACAUGCUUCUUUAUAUCCUCAUAGAUAUCACUGCGCUAUGGAAUGUAAGGAAGUGUGUGGUUUUGGCAAGUGCUUCUUCACGGCCGACGA
Get precursor sequence
Structure
        10          20        30        40        50          
GGACCUCGGAGGACACCU--|  C  C                     C U    GAUAUC 
                    CUU CC AGGCCACAUGCUUCUUUAUAU C CAUA      \
                    GAA GG UUUGGUGUGUGAAGGAAUGUA G GUAU      A
AGCAGCCGGCACUUCUUCGU^  C  U                     A -    CGCGUC 
.       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Star sequence

Rno-Mir-1-P2_5p*
mirBase accessionMIMAT0017154
Sequence 
0- ACAUGCUUCUUUAUAUCCUCAUA -23
Get sequence
Proposed targets TargetScanVert: rno-miR-206-5p
miRDB: MIMAT0017154
Mature sequence

Rno-Mir-1-P2_3p
mirBase accessionMIMAT0000879
Sequence 
38- UGGAAUGUAAGGAAGUGUGUGG -60
Get sequence
Proposed targets microrna.org: MIMAT0000879
TargetScanVert: rno-miR-206-3p
miRDB: MIMAT0000879