Mir-1-P2

MirGeneDB ID

Cpi-Mir-1-P2

Family name

MIR-1 (all species)

Seed

GGAAUGU

Species

Western painted turtle (Chrysemys picta bellii)

MiRBase ID

cpi-mir-206

Paralogues

Cpi-Mir-1-P1 Cpi-Mir-1-P3 Cpi-Mir-1-P4

Orthologues

Aae-Mir-1 Aca-Mir-1-P2 Ami-Mir-1-P2 Asu-Mir-1 Bfl-Mir-1 Bge-Mir-1 Bla-Mir-1 Bta-Mir-1-P2 Cbr-Mir-1 Cel-Mir-1 Cfa-Mir-1-P2 Cgi-Mir-1 Cin-Mir-1 Cli-Mir-1-P2 Cpo-Mir-1-P2 Cte-Mir-1 Dan-Mir-1 Dma-Mir-1 Dme-Mir-1 Dmo-Mir-1 Dno-Mir-1-P2 Dpu-Mir-1 Dre-Mir-1-P2a Dre-Mir-1-P2b Dsi-Mir-1 Dya-Mir-1 Esc-Mir-1 Ete-Mir-1-P2 Gga-Mir-1-P2 Gja-Mir-1-P2e Gja-Mir-1-P2f Gmo-Mir-1-P2a Hme-Mir-1 Hsa-Mir-1-P2 Isc-Mir-1 Lan-Mir-1 Lch-Mir-1-P2 Lgi-Mir-1 Loc-Mir-1-P2 Mal-Mir-1-P2a Mdo-Mir-1-P2 Mml-Mir-1-P2 Mmu-Mir-1-P2 Mun-Mir-1-P2 Oan-Mir-1-P2 Obi-Mir-1 Ocu-Mir-1-P2 Ovu-Mir-1 Pbv-Mir-1-P2 Pfl-Mir-1 Pma-Mir-1-o2 Pmi-Mir-1 Rno-Mir-1-P2 Sha-Mir-1-P2 Sko-Mir-1 Spt-Mir-1-P2 Spu-Mir-1 Tca-Mir-1 Tgu-Mir-1-P2 Tni-Mir-1-P2a Xbo-Mir-1 Xla-Mir-1-P2c Xla-Mir-1-P2d Xtr-Mir-1-P2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(chrPic1)

JH584857: 808079-808138 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-1-P2)

Mir-133-P2-v1 JH584857: 801505-801563 [-] UCSC Ensembl
Mir-133-P2-v2 JH584857: 801505-801563 [-] UCSC Ensembl
Mir-1-P2 JH584857: 808079-808138 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GACUGACAGACAGACUUCUCUUUUGAGACAACAUGCUUCUUUAUAUCCCCAUAUGAAUUAUGCUGCUAUGGAAUGUAAGGAAGUGUGUGGUUUCAGGGAGAUGAAAUUAUAUACACCAUC

Get precursor sequence

Structure

        10           20        30        40        50          
GACUGACAGACAGACUU---|     U     A                CC     UGAAUU 
                    CUCUUU GAGAC ACAUGCUUCUUUAUAU  CCAUA      \
                    GAGGGA CUUUG UGUGUGAAGGAAUGUA  GGUAU      A
CUACCACAUAUAUUAAAGUA^     -     G                A-     CGUCGU 
.       110       100         90        80         70