MirGeneDB ID | Gja-Mir-1-P2e |
Family name |
MIR-1 (all species) |
Seed |
GGAAUGU |
Species |
Schlegels Japanese gecko (Gekko japonicus) |
MiRBase ID |
|
Paralogues |
Gja-Mir-1-P1
Gja-Mir-1-P2f
Gja-Mir-1-P3
Gja-Mir-1-P4c
Gja-Mir-1-P4d
|
Orthologues |
Aae-Mir-1
Aca-Mir-1-P2
Ami-Mir-1-P2
Asu-Mir-1
Bfl-Mir-1
Bge-Mir-1
Bla-Mir-1
Bta-Mir-1-P2
Cbr-Mir-1
Cel-Mir-1
Cfa-Mir-1-P2
Cgi-Mir-1
Cin-Mir-1
Cli-Mir-1-P2
Cpi-Mir-1-P2
Cpo-Mir-1-P2
Cte-Mir-1
Dan-Mir-1
Dma-Mir-1
Dme-Mir-1
Dmo-Mir-1
Dno-Mir-1-P2
Dpu-Mir-1
Dsi-Mir-1
Dya-Mir-1
Esc-Mir-1
Ete-Mir-1-P2
Gga-Mir-1-P2
Hme-Mir-1
Hsa-Mir-1-P2
Isc-Mir-1
Lan-Mir-1
Lch-Mir-1-P2
Lgi-Mir-1
Loc-Mir-1-P2
Mdo-Mir-1-P2
Mml-Mir-1-P2
Mmu-Mir-1-P2
Mun-Mir-1-P2
Oan-Mir-1-P2
Obi-Mir-1
Ocu-Mir-1-P2
Ovu-Mir-1
Pbv-Mir-1-P2
Pfl-Mir-1
Pma-Mir-1-o2
Pmi-Mir-1
Rno-Mir-1-P2
Sha-Mir-1-P2
Sko-Mir-1
Spt-Mir-1-P2
Spu-Mir-1
Tca-Mir-1
Tgu-Mir-1-P2
Xbo-Mir-1
Xtr-Mir-1-P2
|
Node of Origin (locus) |
G. japonicus
|
Node of Origin (family) |
Bilateria
|
Genome context (GCF_001447785.1_Gekko_japonicus) |
NW_015174362.1: 18135-18194 [+]
|
Precursor (pre-Mir +30nt flank) |
GAGAAAAGACCAGUUUCUCCUUUUGAGGCGACAUGCUUCUUUAUAUCCCCAUAUGAAUUAUACUGCUAUGGAAUGUAAGGAAGUGUGUGGUUUCGGGGAGAUGACCGUCCACACGGCCGU
Get precursor sequence
|
Structure | 10 20 30 40 50
GAGAAAAGACCAGUUUC----| UU G CC UGAAUU
UCCU UGAGGC ACAUGCUUCUUUAUAU CCAUA \
AGGG GCUUUG UGUGUGAAGGAAUGUA GGUAU A
UGCCGGCACACCUGCCAGUAG^ -- G A- CGUCAU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Gja-Mir-1-P2e_5p* |
mirBase accession | None |
Sequence |
0- ACAUGCUUCUUUAUAUCCCCAUA -23
Get sequence
|
Mature sequence |
Gja-Mir-1-P2e_3p |
mirBase accession | None |
Sequence |
38- UGGAAUGUAAGGAAGUGUGUGG -60
Get sequence
|