Mir-1-P2e

MirGeneDB ID

Gja-Mir-1-P2e

Family name

MIR-1 (all species)

Species

Schlegels Japanese gecko (Gekko japonicus)

MiRBase ID

Paralogues

Gja-Mir-1-P1 Gja-Mir-1-P2f Gja-Mir-1-P3 Gja-Mir-1-P4c Gja-Mir-1-P4d

Orthologues

Aae-Mir-1 Aca-Mir-1-P2 Aga-Mir-1 Agr-Mir-1 Ami-Mir-1-P2 Asu-Mir-1 Bfl-Mir-1 Bge-Mir-1 Bla-Mir-1 Bta-Mir-1-P2 Cbr-Mir-1 Cel-Mir-1 Cfa-Mir-1-P2 Cin-Mir-1 Cja-Mir-1-P2 Cli-Mir-1-P2 Cpi-Mir-1-P2 Cpo-Mir-1-P2 Cte-Mir-1 Dan-Mir-1 Dgr-Mir-1 Dlo-Mir-1 Dma-Mir-1 Dme-Mir-1 Dmo-Mir-1 Dno-Mir-1-P2 Dpu-Mir-1 Dsi-Mir-1 Dya-Mir-1 Eba-Mir-1 Eca-Mir-1-P2 Egr-Mir-1 Esc-Mir-1 Ete-Mir-1-P2 Gga-Mir-1-P2 Gpa-Mir-1 Gsa-Mir-1 Gsp-Mir-1 Hme-Mir-1 Hmi-Mir-1 Hru-Mir-1 Hsa-Mir-1-P2 Isc-Mir-1 Laf-Mir-1-P2 Lan-Mir-1 Lch-Mir-1-P2 Lgi-Mir-1 Lhy-Mir-1 Llo-Mir-1 Loc-Mir-1-P2 Mdo-Mir-1-P2 Mgi-Mir-1 Mml-Mir-1-P2 Mmr-Mir-1-P2 Mmu-Mir-1-P2 Mom-Mir-1 Mun-Mir-1-P2 Oan-Mir-1-P2 Obi-Mir-1 Ocu-Mir-1-P2 Ofu-Mir-1 Ovu-Mir-1 Pab-Mir-1-P2 Pau-Mir-1 Pbv-Mir-1-P2 Pca-Mir-1 Pcr-Mir-1 Pdu-Mir-1 Pfl-Mir-1 Ple-Mir-1 Pma-Mir-1-o2 Pmi-Mir-1 Rno-Mir-1-P2 Rph-Mir-1 Sha-Mir-1-P2 Sko-Mir-1 Sma-Mir-1 Sne-Mir-1 Snu-Mir-1 Spt-Mir-1-P2 Spu-Mir-1 Sro-Mir-1 Tca-Mir-1 Tgu-Mir-1-P2 Tur-Mir-1 War-Mir-1 Xbo-Mir-1 Xtr-Mir-1-P2

Node of Origin (locus)

G. japonicus

Node of Origin (family)

Bilateria

Genome context
(GCF_001447785.1_Gekko_japonicus)

NW_015174362.1: 18135-18194 [+]

Clustered miRNAs
(< 50kb from Mir-1-P2e)

Mir-1-P2e NW_015174362.1: 18135-18194 [+]
Mir-133-P2-v1 NW_015174362.1: 27171-27229 [+]
Mir-133-P2-v2 NW_015174362.1: 27171-27229 [+]

Seed

GGAAUGU

Precursor
(pre-Mir +30nt flank)

GAGAAAAGACCAGUUUCUCCUUUUGAGGCGACAUGCUUCUUUAUAUCCCCAUAUGAAUUAUACUGCUAUGGAAUGUAAGGAAGUGUGUGGUUUCGGGGAGAUGACCGUCCACACGGCCGU

Get precursor sequence

Structure

        10            20        30        40        50          
GAGAAAAGACCAGUUUC----|   UU      G                CC     UGAAUU 
                     UCCU  UGAGGC ACAUGCUUCUUUAUAU  CCAUA      \
                     AGGG  GCUUUG UGUGUGAAGGAAUGUA  GGUAU      A
UGCCGGCACACCUGCCAGUAG^   --      G                A-     CGUCAU 
.       110       100          90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Star sequence

Gja-Mir-1-P2e_5p*

mirBase accession

None

Sequence

0- ACAUGCUUCUUUAUAUCCCCAUA -23

Get sequence

Mature sequence

Gja-Mir-1-P2e_3p

mirBase accession

None

Sequence

38- UGGAAUGUAAGGAAGUGUGUGG -60

Get sequence