MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-133-P2

Family name MIR-133 (all species)
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-133-P1-v1  Gja-Mir-133-P3-v1  Gja-Mir-133-P4-v1 
Orthologues Aae-Mir-133  Aca-Mir-133-P2-v1  Aga-Mir-133  Ami-Mir-133-P2-v1  Asu-Mir-133  Bge-Mir-133  Bta-Mir-133-P2-v1  Cbr-Mir-133  Cel-Mir-133  Cfa-Mir-133-P2-v1  Cin-Mir-133  Cja-Mir-133-P2  Cli-Mir-133-P2-v1  Cpi-Mir-133-P2-v1  Cpo-Mir-133-P2-v1  Cte-Mir-133  Dan-Mir-133  Dgr-Mir-133  Dlo-Mir-133  Dma-Mir-133  Dme-Mir-133  Dmo-Mir-133  Dno-Mir-133-P2-v1  Dpu-Mir-133  Dre-Mir-133-P2a-v1  Dre-Mir-133-P2b-v1  Dsi-Mir-133  Dya-Mir-133  Eba-Mir-133  Eca-Mir-133-P2-v1  Efe-Mir-133  Egr-Mir-133  Esc-Mir-133  Ete-Mir-133-P2-v1  Gga-Mir-133-P2-v1  Gmo-Mir-133-P2a-v1  Gpa-Mir-133  Gsp-Mir-133  Hme-Mir-133  Hru-Mir-133  Hsa-Mir-133-P2-v1  Isc-Mir-133  Laf-Mir-133-P2  Lan-Mir-133  Lch-Mir-133-P2  Lgi-Mir-133  Lhy-Mir-133  Llo-Mir-133  Loc-Mir-133-P2-v1  Mal-Mir-133-P2a-v1  Mdo-Mir-133-P2-v1  Mgi-Mir-133  Mml-Mir-133-P2-v1  Mmr-Mir-133-P2-v1  Mmu-Mir-133-P2-v1  Mom-Mir-133  Mun-Mir-133-P2-v1  Oan-Mir-133-P2-v1  Obi-Mir-133  Ocu-Mir-133-P2-v1  Ofu-Mir-133  Ovu-Mir-133  Pab-Mir-133-P2  Pau-Mir-133  Pbv-Mir-133-P2-v1  Pca-Mir-133  Pcr-Mir-133  Pdu-Mir-133  Pma-Mir-133-o2-v1  Pve-Mir-133  Rno-Mir-133-P2-v1  Rph-Mir-133  Sha-Mir-133-P2-v1  Sma-Mir-133  Snu-Mir-133  Spt-Mir-133-P2  Spu-Mir-133  Tca-Mir-133  Tgu-Mir-133-P2-v1  Tni-Mir-133-P2a-v1  Tur-Mir-133  War-Mir-133  Xbo-Mir-133  Xla-Mir-133-P2c-v1  Xla-Mir-133-P2d-v1  Xtr-Mir-133-P2-v1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015174362.1: 27171-27229 [+]
Clustered miRNAs
(< 50kb from Mir-133-P2-v1)		 Mir-1-P2e NW_015174362.1: 18135-18194 [+]
Mir-133-P2-v1 NW_015174362.1: 27171-27229 [+]
Mir-133-P2-v2 NW_015174362.1: 27171-27229 [+]
Variant

Gja-Mir-133-P2-v1
Seed UUGGUCC
Precursor
(pre-Mir +30nt flank)		 
CACACCGGACAGAAGCUGCAGGCUGCUCUGGCUGGUCAAAUGGAACCAAGGCCGUCUUCCUGGGAGGUUUGGUCCCCUUCAACCAGCUACAGCAGCGUUGCGAUUGGUCAUCUGCACAA
Get precursor sequence
Structure
        10         20         30        40        50         
CACACCGGACAGAAGCU-    -|     C        CA  U  A      G  GUCUU 
                  GCAG GCUGCU UGGCUGGU  AA GG ACCAAG CC     C
                  CGUU CGACGA AUCGACCA  UU CC UGGUUU GG     C
AACACGUCUACUGGUUAG    G^     C        AC  C  C      -  AGGGU 
       110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
- +
To
Star sequence

Gja-Mir-133-P2-v1_5p*
mirBase accessionNone
Sequence 
0- GCUGGUCAAAUGGAACCAAGGCC -23
Get sequence
Mature sequence

Gja-Mir-133-P2-v1_3p
mirBase accessionNone
Sequence 
37- UUUGGUCCCCUUCAACCAGCUA -59
Get sequence
Variant

Gja-Mir-133-P2-v2
Seed UGGUCCC
Precursor
(pre-Mir +30nt flank)		 
CACACCGGACAGAAGCUGCAGGCUGCUCUGGCUGGUCAAAUGGAACCAAGGCCGUCUUCCUGGGAGGUUUGGUCCCCUUCAACCAGCUACAGCAGCGUUGCGAUUGGUCAUCUGCACAA
Get precursor sequence
Structure
        10         20         30        40        50         
CACACCGGACAGAAGCU-    -|     C        CA  U  A      GCCGUCUU 
                  GCAG GCUGCU UGGCUGGU  AA GG ACCAAG        \
                  CGUU CGACGA AUCGACCA  UU CC UGGUUU        C
AACACGUCUACUGGUUAG    G^     C        AC  C  C      GGAGGGUC 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
- +
To
Star sequence

Gja-Mir-133-P2-v2_5p*
mirBase accessionNone
Sequence 
0- GCUGGUCAAAUGGAACCAAGG -21
Get sequence
Mature sequence

Gja-Mir-133-P2-v2_3p
mirBase accessionNone
Sequence 
38- UUGGUCCCCUUCAACCAGCUA -59
Get sequence