Mir-1-P2

MirGeneDB ID

Loc-Mir-1-P2

Family name

MIR-1 (all species)

Seed

GGAAUGU

Species

Spotted gar (Lepisosteus oculatus)

MiRBase ID

Paralogues

Loc-Mir-1-P1 Loc-Mir-1-P3

Orthologues

Aae-Mir-1 Aca-Mir-1-P2 Ami-Mir-1-P2 Asu-Mir-1 Bfl-Mir-1 Bge-Mir-1 Bla-Mir-1 Bta-Mir-1-P2 Cbr-Mir-1 Cel-Mir-1 Cfa-Mir-1-P2 Cgi-Mir-1 Cin-Mir-1 Cli-Mir-1-P2 Cpi-Mir-1-P2 Cpo-Mir-1-P2 Cte-Mir-1 Dan-Mir-1 Dma-Mir-1 Dme-Mir-1 Dmo-Mir-1 Dno-Mir-1-P2 Dpu-Mir-1 Dre-Mir-1-P2a Dre-Mir-1-P2b Dsi-Mir-1 Dya-Mir-1 Esc-Mir-1 Ete-Mir-1-P2 Gga-Mir-1-P2 Gja-Mir-1-P2e Gja-Mir-1-P2f Gmo-Mir-1-P2a Hme-Mir-1 Hsa-Mir-1-P2 Isc-Mir-1 Lan-Mir-1 Lch-Mir-1-P2 Lgi-Mir-1 Mal-Mir-1-P2a Mdo-Mir-1-P2 Mml-Mir-1-P2 Mmu-Mir-1-P2 Mun-Mir-1-P2 Oan-Mir-1-P2 Obi-Mir-1 Ocu-Mir-1-P2 Ovu-Mir-1 Pbv-Mir-1-P2 Pfl-Mir-1 Pma-Mir-1-o2 Pmi-Mir-1 Rno-Mir-1-P2 Sha-Mir-1-P2 Sko-Mir-1 Spt-Mir-1-P2 Spu-Mir-1 Tca-Mir-1 Tgu-Mir-1-P2 Tni-Mir-1-P2a Xbo-Mir-1 Xla-Mir-1-P2c Xla-Mir-1-P2d Xtr-Mir-1-P2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(LepOcu1)

LG1: 45090601-45090660 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

GCAGUCUUAAUAUCUAUGCUCCCAGAGACAACAUGCUUCCUUAUAUCCCCAUAUGAGUAAGUCAGUUAUGGAAUGUAAGGAAGUGUGUGGUUUCAGGGUGAUUGGUCUUCACUAUGCAAA

Get precursor sequence

Structure

        10        20          30        40        50          
GCAGUCUUAAUAUCUAUGCU--|  A     A                CC     UGAGUA 
                      CCC GAGAC ACAUGCUUCCUUAUAU  CCAUA      \
                      GGG CUUUG UGUGUGAAGGAAUGUA  GGUAU      A
AAACGUAUCACUUCUGGUUAGU^  A     G                A-     UGACUG 
.       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Br	Br	He	He	He	He	Ov	Ov	Ov	Ov	Te	Te	Te	Te	To

Star sequence

Loc-Mir-1-P2_5p* (predicted)

mirBase accession

None

Sequence

0- ACAUGCUUCCUUAUAUCCCCAUA -23

Get sequence

Mature sequence

Loc-Mir-1-P2_3p

mirBase accession

None

Sequence

38- UGGAAUGUAAGGAAGUGUGUGG -60

Get sequence