MirGeneDB ID | Xla-Mir-1-P2c |
Family name |
MIR-1 (all species) |
Seed |
GGAAUGU |
Species |
African clawed frog (Xenopus laevis) |
MiRBase ID |
xla-mir-206
|
Paralogues |
Xla-Mir-1-P1a
Xla-Mir-1-P1b
Xla-Mir-1-P2d
Xla-Mir-1-P3a
Xla-Mir-1-P3b
Xla-Mir-1-P4a
Xla-Mir-1-P4b
|
Orthologues |
Aae-Mir-1
Aca-Mir-1-P2
Ami-Mir-1-P2
Asu-Mir-1
Bfl-Mir-1
Bge-Mir-1
Bla-Mir-1
Bta-Mir-1-P2
Cbr-Mir-1
Cel-Mir-1
Cfa-Mir-1-P2
Cgi-Mir-1
Cin-Mir-1
Cli-Mir-1-P2
Cpi-Mir-1-P2
Cpo-Mir-1-P2
Cte-Mir-1
Dan-Mir-1
Dma-Mir-1
Dme-Mir-1
Dmo-Mir-1
Dno-Mir-1-P2
Dpu-Mir-1
Dsi-Mir-1
Dya-Mir-1
Esc-Mir-1
Ete-Mir-1-P2
Gga-Mir-1-P2
Hme-Mir-1
Hsa-Mir-1-P2
Isc-Mir-1
Lan-Mir-1
Lch-Mir-1-P2
Lgi-Mir-1
Loc-Mir-1-P2
Mdo-Mir-1-P2
Mml-Mir-1-P2
Mmu-Mir-1-P2
Mun-Mir-1-P2
Oan-Mir-1-P2
Obi-Mir-1
Ocu-Mir-1-P2
Ovu-Mir-1
Pbv-Mir-1-P2
Pfl-Mir-1
Pma-Mir-1-o2
Pmi-Mir-1
Rno-Mir-1-P2
Sha-Mir-1-P2
Sko-Mir-1
Spt-Mir-1-P2
Spu-Mir-1
Tca-Mir-1
Tgu-Mir-1-P2
Xbo-Mir-1
Xtr-Mir-1-P2
|
Node of Origin (locus) |
X. laevis
|
Node of Origin (family) |
Bilateria
|
Genome context (GCF_001663975.1_XLA_v2) |
NC_030732.1: 150790433-150790492 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GUACGAAGGGCGUCUUGCUCACGGGAGGUCACAUGCUUCUUUAUAUACCCAUAUGAACUACAUUGUUAUGGAAUGUAAGGAAGUGUGUGGCUUCUCUGAGUCCAUCUCCAUUAACCCUUC
Get precursor sequence
|
Structure | 10 20 30 40 50
GUACGAAGGGCGUCUUG---| C AC UGAACU
CUCA GGGAGGUCACAUGCUUCUUUAUAU CCAUA \
GAGU CUCUUCGGUGUGUGAAGGAAUGUA GGUAU A
CUUCCCAAUUACCUCUACCU^ - A- UGUUAC
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Xla-Mir-1-P2c_5p* |
mirBase accession | MIMAT0046526 |
Sequence |
0- ACAUGCUUCUUUAUAUACCCAUA -23
Get sequence
|
Mature sequence |
Xla-Mir-1-P2c_3p |
mirBase accession | MIMAT0046527 |
Sequence |
38- UGGAAUGUAAGGAAGUGUGUGG -60
Get sequence
|