MirGeneDB 3.0
MirGeneDB ID

Lch-Mir-1-P3

Family name MIR-1 (all species)
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-1-P1  Lch-Mir-1-P2  Lch-Mir-1-P4 
Orthologues Aae-Mir-1  Aca-Mir-1-P3  Aga-Mir-1  Agr-Mir-1  Ami-Mir-1-P3  Asu-Mir-1  Bfl-Mir-1  Bge-Mir-1  Bla-Mir-1  Bta-Mir-1-P3  Cbr-Mir-1  Cel-Mir-1  Cfa-Mir-1-P3  Cin-Mir-1  Cja-Mir-1-P3  Cli-Mir-1-P3  Cmi-Mir-1-P3  Cpi-Mir-1-P3  Cpo-Mir-1-P3  Cte-Mir-1  Dan-Mir-1  Dgr-Mir-1  Dlo-Mir-1  Dma-Mir-1  Dme-Mir-1  Dmo-Mir-1  Dno-Mir-1-P3  Dpu-Mir-1  Dre-Mir-1-P3  Dsi-Mir-1  Dya-Mir-1  Eba-Mir-1  Eca-Mir-1-P3  Egr-Mir-1  Esc-Mir-1  Ete-Mir-1-P3  Gga-Mir-1-P3  Gja-Mir-1-P3  Gmo-Mir-1-P3  Gpa-Mir-1  Gsa-Mir-1  Gsp-Mir-1  Hme-Mir-1  Hmi-Mir-1  Hru-Mir-1  Hsa-Mir-1-P3  Isc-Mir-1  Laf-Mir-1-P3  Lan-Mir-1  Lgi-Mir-1  Lhy-Mir-1  Llo-Mir-1  Loc-Mir-1-P3  Mal-Mir-1-P3  Mdo-Mir-1-P3  Mgi-Mir-1  Mml-Mir-1-P3  Mmr-Mir-1-P3  Mmu-Mir-1-P3  Mom-Mir-1  Mun-Mir-1-P3  Oan-Mir-1-P3  Obi-Mir-1  Ocu-Mir-1-P3  Ofu-Mir-1  Ovu-Mir-1  Pab-Mir-1-P3  Pau-Mir-1  Pbv-Mir-1-P3  Pca-Mir-1  Pcr-Mir-1  Pdu-Mir-1  Pfl-Mir-1  Ple-Mir-1  Pma-Mir-1-o3  Pmi-Mir-1  Rno-Mir-1-P3  Rph-Mir-1  Sha-Mir-1-P3  Sko-Mir-1  Sma-Mir-1  Sne-Mir-1  Snu-Mir-1  Spt-Mir-1-P3  Spu-Mir-1  Sro-Mir-1  Sto-Mir-1-P3  Tca-Mir-1  Tgu-Mir-1-P3  Tni-Mir-1-P3  Tur-Mir-1  War-Mir-1  Xbo-Mir-1  Xla-Mir-1-P3a  Xla-Mir-1-P3b  Xtr-Mir-1-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(LatCha1_add)		 JH126883.1: 1364534-1364594 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-1-P3)		 Mir-1-P3 JH126883.1: 1364534-1364594 [+] Ensembl
Mir-133-P3 JH126883.1: 1404883-1404942 [+] Ensembl
Seed GGAAUGU
Precursor
(pre-Mir +30nt flank)		 
CACGCGUACUGAAAAAUGCCUGCUUGAGGGACAUACUUCUUUAUAUACCCAUAUGAACCUGUCUAGCUAUGGAAUGUAAAGAAGUAUGUAUUUCAGGUAGGGAAUCCUACUCGGCGAAGAA
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Structure
        10          20        30        40        50        60
CACGCGUACUGAAAAAUG--|          G                AC     UGAACC 
                    CCUGCUUGAGG ACAUACUUCUUUAUAU  CCAUA      U
                    GGAUGGACUUU UGUAUGAAGAAAUGUA  GGUAU      G
AAGAAGCGGCUCAUCCUAAG^          A                A-     CGAUCU 
 .       110       100        90        80         70
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Star sequence

Lch-Mir-1-P3_5p* (predicted)
mirBase accessionNone
Sequence 
0- ACAUACUUCUUUAUAUACCCAUA -23
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Mature sequence

Lch-Mir-1-P3_3p (predicted)
mirBase accessionNone
Sequence 
39- UGGAAUGUAAAGAAGUAUGUAU -61
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