MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-133-o3

Family name MIR-133 (all species)
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-133a
Paralogues Pma-Mir-133-o1-v1  Pma-Mir-133-o2-v1  Pma-Mir-133-o4-v1 
Orthologues Aae-Mir-133  Aca-Mir-133-P3-v1  Aga-Mir-133  Ami-Mir-133-P3-v1  Asu-Mir-133  Bge-Mir-133  Bta-Mir-133-P3-v1  Cbr-Mir-133  Cel-Mir-133  Cfa-Mir-133-P3-v1  Cin-Mir-133  Cja-Mir-133-P3  Cli-Mir-133-P3-v1  Cmi-Mir-133-P3-v1  Cpi-Mir-133-P3-v1  Cpo-Mir-133-P3-v1  Cte-Mir-133  Dan-Mir-133  Dgr-Mir-133  Dlo-Mir-133  Dma-Mir-133  Dme-Mir-133  Dmo-Mir-133  Dno-Mir-133-P3-v1  Dpu-Mir-133  Dre-Mir-133-P3-v1  Dsi-Mir-133  Dya-Mir-133  Eba-Mir-133  Eca-Mir-133-P3-v1  Efe-Mir-133  Egr-Mir-133  Esc-Mir-133  Ete-Mir-133-P3-v1  Gga-Mir-133-P3-v1  Gja-Mir-133-P3-v1  Gmo-Mir-133-P3-v1  Gpa-Mir-133  Gsp-Mir-133  Hme-Mir-133  Hru-Mir-133  Hsa-Mir-133-P3-v1  Isc-Mir-133  Laf-Mir-133-P3-v1  Lan-Mir-133  Lch-Mir-133-P3  Lgi-Mir-133  Lhy-Mir-133  Llo-Mir-133  Loc-Mir-133-P3-v1  Mal-Mir-133-P3-v1  Mdo-Mir-133-P3-v1  Mgi-Mir-133  Mml-Mir-133-P3-v1  Mmr-Mir-133-P3-v1  Mmu-Mir-133-P3-v1  Mom-Mir-133  Mun-Mir-133-P3-v1  Neu-Mir-133-P3-v1  Oan-Mir-133-P3-v1  Obi-Mir-133  Ofu-Mir-133  Ovu-Mir-133  Pab-Mir-133-P3  Pau-Mir-133  Pbv-Mir-133-P3-v1  Pca-Mir-133  Pcr-Mir-133  Pdu-Mir-133  Pve-Mir-133  Rno-Mir-133-P3-v1  Rph-Mir-133  Sha-Mir-133-P3-v1  Sma-Mir-133  Snu-Mir-133  Spt-Mir-133-P3  Spu-Mir-133  Sto-Mir-133-P3-v1  Tca-Mir-133  Tgu-Mir-133-P3-v1  Tur-Mir-133  War-Mir-133  Xbo-Mir-133  Xla-Mir-133-P3a-v1  Xla-Mir-133-P3b-v1  Xtr-Mir-133-P3-v1 
Node of Origin (locus) P. marinus
Node of Origin (family) Bilateria
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046091.1: 2255639-2255697 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-133-o3-v1)		 Mir-1-o3 NC_046091.1: 2243020-2243080 [+] UCSC Ensembl
Mir-133-o3-v1 NC_046091.1: 2255639-2255697 [+] UCSC Ensembl
Mir-133-o3-v2 NC_046091.1: 2255639-2255697 [+] UCSC Ensembl
Variant

Pma-Mir-133-o3-v1
Seed UUGGUCC
Precursor
(pre-Mir +30nt flank)		 
GGCCCAGGAACCGGAUCGAUGCUUUGCUGGAGCUGGUAAAAUGGAACCAGAUCAACUAACCAACGGAUUUGGUCCCCUUCAACCAGCUUGAGCUACGCAUUAUAUACCACGCCACGCCA
Get precursor sequence
Structure
        10         20        30        40        50         
GGCCCAGGAACCGGAUC-|    UUU   G        AA  U  A        AACUA 
                  GAUGC   GCU GAGCUGGU  AA GG ACCAGAUC     A
                  UUACG   CGA UUCGACCA  UU CC UGGUUUAG     C
ACCGCACCGCACCAUAUA^    CAU   G        AC  C  C        GCAAC 
       110       100        90        80        70        60
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Gi Gu He Ki La Li Mo Mu Sk
Star sequence

Pma-Mir-133-o3-v1_5p* (predicted)
mirBase accessionNone
Sequence 
0- AGCUGGUAAAAUGGAACCAGAUC -23
Get sequence
Mature sequence

Pma-Mir-133-o3-v1_3p
mirBase accessionMIMAT0019460
Sequence 
37- UUUGGUCCCCUUCAACCAGCUU -59
Get sequence
Variant

Pma-Mir-133-o3-v2
Seed UGGUCCC
Precursor
(pre-Mir +30nt flank)		 
GGCCCAGGAACCGGAUCGAUGCUUUGCUGGAGCUGGUAAAAUGGAACCAGAUCAACUAACCAACGGAUUUGGUCCCCUUCAACCAGCUUGAGCUACGCAUUAUAUACCACGCCACGCCA
Get precursor sequence
Structure
        10         20        30        40        50         
GGCCCAGGAACCGGAUC-|    UUU   G        AA  U  A       CAACUA 
                  GAUGC   GCU GAGCUGGU  AA GG ACCAGAU      A
                  UUACG   CGA UUCGACCA  UU CC UGGUUUA      C
ACCGCACCGCACCAUAUA^    CAU   G        AC  C  C       GGCAAC 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Gi Gu He Ki La Li Mo Mu Sk
Star sequence

Pma-Mir-133-o3-v2_5p* (predicted)
mirBase accessionNone
Sequence 
0- AGCUGGUAAAAUGGAACCAGAU -22
Get sequence
Mature sequence

Pma-Mir-133-o3-v2_3p
mirBase accessionMIMAT0019460
Sequence 
38- UUGGUCCCCUUCAACCAGCUU -59
Get sequence