Mir-133-P3

MirGeneDB ID

Pab-Mir-133-P3

Family name

MIR-133 (all species)

Species

Sumatran orangutan (Pongo abelii)

MiRBase ID

Paralogues

Pab-Mir-133-P1 Pab-Mir-133-P2

Orthologues

Aae-Mir-133 Aca-Mir-133-P3-v1 Aga-Mir-133 Ami-Mir-133-P3-v1 Asu-Mir-133 Bge-Mir-133 Bta-Mir-133-P3-v1 Cbr-Mir-133 Cel-Mir-133 Cfa-Mir-133-P3-v1 Cin-Mir-133 Cja-Mir-133-P3 Cli-Mir-133-P3-v1 Cmi-Mir-133-P3-v1 Cpi-Mir-133-P3-v1 Cpo-Mir-133-P3-v1 Cte-Mir-133 Dan-Mir-133 Dgr-Mir-133 Dlo-Mir-133 Dma-Mir-133 Dme-Mir-133 Dmo-Mir-133 Dno-Mir-133-P3-v1 Dpu-Mir-133 Dre-Mir-133-P3-v1 Dsi-Mir-133 Dya-Mir-133 Eba-Mir-133 Eca-Mir-133-P3-v1 Efe-Mir-133 Egr-Mir-133 Esc-Mir-133 Ete-Mir-133-P3-v1 Gga-Mir-133-P3-v1 Gja-Mir-133-P3-v1 Gmo-Mir-133-P3-v1 Gpa-Mir-133 Gsp-Mir-133 Hme-Mir-133 Hru-Mir-133 Hsa-Mir-133-P3-v1 Isc-Mir-133 Laf-Mir-133-P3-v1 Lan-Mir-133 Lch-Mir-133-P3 Lgi-Mir-133 Lhy-Mir-133 Llo-Mir-133 Loc-Mir-133-P3-v1 Mal-Mir-133-P3-v1 Mdo-Mir-133-P3-v1 Mgi-Mir-133 Mml-Mir-133-P3-v1 Mmr-Mir-133-P3-v1 Mmu-Mir-133-P3-v1 Mom-Mir-133 Mun-Mir-133-P3-v1 Neu-Mir-133-P3-v1 Oan-Mir-133-P3-v1 Obi-Mir-133 Ofu-Mir-133 Ovu-Mir-133 Pau-Mir-133 Pbv-Mir-133-P3-v1 Pca-Mir-133 Pcr-Mir-133 Pdu-Mir-133 Pma-Mir-133-o3-v1 Pve-Mir-133 Rno-Mir-133-P3-v1 Rph-Mir-133 Sha-Mir-133-P3-v1 Sma-Mir-133 Snu-Mir-133 Spt-Mir-133-P3 Spu-Mir-133 Sto-Mir-133-P3-v1 Tca-Mir-133 Tgu-Mir-133-P3-v1 Tur-Mir-133 War-Mir-133 Xbo-Mir-133 Xla-Mir-133-P3a-v1 Xla-Mir-133-P3b-v1 Xtr-Mir-133-P3-v1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)

CM054700.2: 66998979-66999038 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-133-P3)

Mir-1-P3 CM054700.2: 66987979-66988039 [+] UCSC Ensembl
Mir-133-P3 CM054700.2: 66998979-66999038 [+] UCSC Ensembl

Seed

UUGGUCC

Precursor
(pre-Mir +30nt flank)

CUCGGAUCUGGGAGCCAAAUGCUUUGCUAGAGCUGGUAAAAUGGAACCAAAUCGACUGUCCAAUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGUGCAUUGAUGGCGCCGUGCGGCCUG

Get precursor sequence

Structure

        10          20        30        40        50         
CUCGGAUCUGGGAGCCA--|    UUU    G       AA  U  A        GACUG 
                   AAUGC   GCUA AGCUGGU  AA GG ACCAAAUC     U
                   UUACG   CGAU UCGACCA  UU CC UGGUUUAG     C
GUCCGGCGUGCCGCGGUAG^    UGU    G       AC  C  C        GUAAC 
.       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	Li	Li

Star sequence

Pab-Mir-133-P3_5p*

mirBase accession

None

Sequence

0- AGCUGGUAAAAUGGAACCAAAUC -23

Get sequence

Mature sequence

Pab-Mir-133-P3_3p (predicted)

mirBase accession

None

Sequence

37- UUUGGUCCCCUUCAACCAGCUGU -60

Get sequence