MirGeneDB ID | Bpl-Mir-1-P23 |
Family name |
MIR-1 (all species) |
Seed |
GGAAUGU |
Species |
Rotifer (Brachionus plicatilis) |
MiRBase ID |
|
Paralogues |
Bpl-Mir-1-P22
|
Orthologues |
Aae-Mir-1
Asu-Mir-1
Bfl-Mir-1
Bge-Mir-1
Bla-Mir-1
Cbr-Mir-1
Cel-Mir-1
Cgi-Mir-1
Cin-Mir-1
Cte-Mir-1
Dan-Mir-1
Dma-Mir-1
Dme-Mir-1
Dmo-Mir-1
Dpu-Mir-1
Dsi-Mir-1
Dya-Mir-1
Esc-Mir-1
Hme-Mir-1
Isc-Mir-1
Lan-Mir-1
Lgi-Mir-1
Obi-Mir-1
Ovu-Mir-1
Pfl-Mir-1
Pmi-Mir-1
Sko-Mir-1
Spu-Mir-1
Tca-Mir-1
Xbo-Mir-1
|
Node of Origin (locus) |
B. plicatilis
|
Node of Origin (family) |
Bilateria
|
Genome context (Bpl_ASM1027981) |
QEOQ01000508.1: 2616878-2616960 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GCUUCAAUUUCGUGUAAUUACCCCCAUUGAACGCACUUAUCUACAAGUCCAUAUUGAUUUAAACAAAAGAGAGAUCCAGAUCUCUCAAUUAUGGAAUGUAGUGAAGUGCGUUGAAUAGUUACACAUGUCAUCGUUGGAACUAA
Get precursor sequence
|
Structure | 10 20 30 40 50 60 70
GCUUCAAUUUCGUGUAAUUACCCCC--| G AU AG UUGAUUUAAACAAAAGA
AUU AACGCACUU CUACA UCCAUA G
UAA UUGCGUGAA GAUGU AGGUAU A
AAUCAAGGUUGCUACUGUACACAUUGA^ G GU A- UAACUCUCUAGACCUAG
140 130 120 110 100 90 80 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Bpl-Mir-1-P23_5p* |
mirBase accession | None |
Sequence |
0- ACGCACUUAUCUACAAGUCCAUA -23
Get sequence
|
Mature sequence |
Bpl-Mir-1-P23_3p |
mirBase accession | None |
Sequence |
61- UGGAAUGUAGUGAAGUGCGUUG -83
Get sequence
|