MirGeneDB 3.0
MirGeneDB ID

Bpl-Mir-1-P23

Family name MIR-1 (all species)
Species Monogonont Rotifer 1 (Brachionus plicatilis)
MiRBase ID
Paralogues Bpl-Mir-1-P22 
Orthologues Aae-Mir-1  Aga-Mir-1  Agr-Mir-1  Asu-Mir-1  Bfl-Mir-1  Bge-Mir-1  Bko-Mir-1-P23a  Bko-Mir-1-P23b  Bla-Mir-1  Cbr-Mir-1  Cel-Mir-1  Cin-Mir-1  Cte-Mir-1  Dan-Mir-1  Dgr-Mir-1  Dlo-Mir-1  Dma-Mir-1  Dme-Mir-1  Dmo-Mir-1  Dpu-Mir-1  Dsi-Mir-1  Dya-Mir-1  Eba-Mir-1  Egr-Mir-1  Esc-Mir-1  Gpa-Mir-1  Gsa-Mir-1  Gsp-Mir-1  Hme-Mir-1  Hmi-Mir-1  Hru-Mir-1  Isc-Mir-1  Lan-Mir-1  Lgi-Mir-1  Lhy-Mir-1  Llo-Mir-1  Mgi-Mir-1  Mom-Mir-1  Obi-Mir-1  Ofu-Mir-1  Ovu-Mir-1  Pau-Mir-1  Pca-Mir-1  Pcr-Mir-1  Pdu-Mir-1  Pfl-Mir-1  Ple-Mir-1  Pmi-Mir-1  Rph-Mir-1  Sko-Mir-1  Sma-Mir-1  Sne-Mir-1  Snu-Mir-1  Spu-Mir-1  Sro-Mir-1  Tca-Mir-1  Tur-Mir-1  War-Mir-1  Xbo-Mir-1 
Node of Origin (locus) Brachionus
Node of Origin (family) Bilateria
Genome context
(Bpl_ASM1027981)		 QEOQ01000508.1: 2616878-2616960 [+] Ensembl
Seed GGAAUGU
Precursor
(pre-Mir +30nt flank)		 
GCUUCAAUUUCGUGUAAUUACCCCCAUUGAACGCACUUAUCUACAAGUCCAUAUUGAUUUAAACAAAAGAGAGAUCCAGAUCUCUCAAUUAUGGAAUGUAGUGAAGUGCGUUGAAUAGUUACACAUGUCAUCGUUGGAACUAA
Get precursor sequence
Structure
        10        20          30        40        50        60        70 
GCUUCAAUUUCGUGUAAUUACCCCC--|  G         AU     AG      UUGAUUUAAACAAAAGA 
                           AUU AACGCACUU  CUACA  UCCAUA                 G
                           UAA UUGCGUGAA  GAUGU  AGGUAU                 A
AAUCAAGGUUGCUACUGUACACAUUGA^  G         GU     A-      UAACUCUCUAGACCUAG 
 140       130       120       110       100         90        80
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Star sequence

Bpl-Mir-1-P23_5p*
mirBase accessionNone
Sequence 
0- ACGCACUUAUCUACAAGUCCAUA -23
Get sequence
Mature sequence

Bpl-Mir-1-P23_3p
mirBase accessionNone
Sequence 
61- UGGAAUGUAGUGAAGUGCGUUG -83
Get sequence