MirGeneDB 2.1

MirGeneDB ID

Bpl-Mir-1-P22

Family name MIR-1 (all species)
Seed GGAAUGU
Species Rotifer (Brachionus plicatilis)
MiRBase ID
Paralogues Bpl-Mir-1-P23 
Orthologues Aae-Mir-1  Asu-Mir-1  Bfl-Mir-1  Bge-Mir-1  Bla-Mir-1  Cbr-Mir-1  Cel-Mir-1  Cgi-Mir-1  Cin-Mir-1  Cte-Mir-1  Dan-Mir-1  Dma-Mir-1  Dme-Mir-1  Dmo-Mir-1  Dpu-Mir-1  Dsi-Mir-1  Dya-Mir-1  Esc-Mir-1  Hme-Mir-1  Isc-Mir-1  Lan-Mir-1  Lgi-Mir-1  Obi-Mir-1  Ovu-Mir-1  Pfl-Mir-1  Pmi-Mir-1  Sko-Mir-1  Spu-Mir-1  Tca-Mir-1  Xbo-Mir-1 
Node of Origin (locus) B. plicatilis
Node of Origin (family) Bilateria
Genome context
(Bpl_ASM1027981)
QEOQ01000226.1: 1075395-1075454 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UUCUAUUUCAGAGCAACUAACUUUCAUUCGACCAACUUCUUUGCAAAGCCAUAUUGUCACUUAAUCUAUGGAAUGUAAAGAAGUUUGUGGAGUAAAGUGGUAUGACGACAGACAAUUUUU
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Structure
        10           20        30        40        50          
UUCUAUUUCAGAGCAACUA---|    C    G  C            AAG     UUGUCA 
                      ACUUU AUUC AC AACUUCUUUGCA   CCAUA      \
                      UGAAA UGAG UG UUGAAGAAAUGU   GGUAU      C
UUUUUAACAGACAGCAGUAUGG^    -    G  U            AA-     CUAAUU 
.       110       100         90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Bpl-Mir-1-P22_5p*

mirBase accessionNone
Sequence
0- ACCAACUUCUUUGCAAAGCCAUA -23
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Mature sequence

Bpl-Mir-1-P22_3p

mirBase accessionNone
Sequence
38- UGGAAUGUAAAGAAGUUUGUGG -60
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