Mir-1-P16

MirGeneDB ID

Lpo-Mir-1-P16

Family name

MIR-1 (all species)

Species

Atlantic horseshoe crab (Limulus polyphemus)

MiRBase ID

Paralogues

Lpo-Mir-1-P13 Lpo-Mir-1-P14 Lpo-Mir-1-P15 Lpo-Mir-1-P17

Orthologues

Aae-Mir-1 Aga-Mir-1 Agr-Mir-1 Asu-Mir-1 Bfl-Mir-1 Bge-Mir-1 Bla-Mir-1 Cbr-Mir-1 Cel-Mir-1 Cin-Mir-1 Cte-Mir-1 Dan-Mir-1 Dgr-Mir-1 Dlo-Mir-1 Dma-Mir-1 Dme-Mir-1 Dmo-Mir-1 Dpu-Mir-1 Dsi-Mir-1 Dya-Mir-1 Eba-Mir-1 Egr-Mir-1 Esc-Mir-1 Gpa-Mir-1 Gsa-Mir-1 Gsp-Mir-1 Hme-Mir-1 Hmi-Mir-1 Hru-Mir-1 Isc-Mir-1 Lan-Mir-1 Lgi-Mir-1 Lhy-Mir-1 Llo-Mir-1 Mgi-Mir-1 Mom-Mir-1 Obi-Mir-1 Ofu-Mir-1 Ovu-Mir-1 Pau-Mir-1 Pca-Mir-1 Pcr-Mir-1 Pdu-Mir-1 Pfl-Mir-1 Ple-Mir-1 Pmi-Mir-1 Rph-Mir-1 Sko-Mir-1 Sma-Mir-1 Sne-Mir-1 Snu-Mir-1 Spu-Mir-1 Sro-Mir-1 Tca-Mir-1 Tur-Mir-1 War-Mir-1 Xbo-Mir-1

Node of Origin (locus)

L. polyphemus

Node of Origin (family)

Bilateria

Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)

NW_013670974.1: 27794-27854 [-] Ensembl

Seed

GGAAUGU

Precursor
(pre-Mir +30nt flank)

AUCACGUGCAGUUUGAUCUCCUUCCGAGCCCCGUGCUUCUUCACUUCCCAUAUGUGGCAUUGUGCUGUAUGGAAUGUAAAGAAGUAUGGAGUGUAGUGGGAGUUUUUCAACACCAAGAGUC

Get precursor sequence

Structure

        10          20        30        40        50          
AUCACGUGCAGUUUGAU--|    UCCGA  C           C  UUC     UGUGGCA 
                   CUCCU     GC CCGUGCUUCUU AC   CCAUA       \
                   GAGGG     UG GGUAUGAAGAA UG   GGUAU       U
CUGAGAACCACAACUUUUU^    UGAUG  A           A  UAA     GUCGUGU 
 .       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Ge	Ge	So	So	So	To

Star sequence

Lpo-Mir-1-P16_5p*

mirBase accession

None

Sequence

0- CCGUGCUUCUUCACUUCCCAUA -22

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Mature sequence

Lpo-Mir-1-P16_3p

mirBase accession

None

Sequence

39- UGGAAUGUAAAGAAGUAUGGAG -61

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