MirGeneDB 3.0
MirGeneDB ID

Efe-Mir-1-P9

Family name MIR-1 (all species)
Species Common brandling worm (Eisenia fetida)
MiRBase ID
Paralogues Efe-Mir-1-P10  Efe-Mir-1-P11  Efe-Mir-1-P12 
Orthologues Aae-Mir-1  Aga-Mir-1  Agr-Mir-1  Asu-Mir-1  Bfl-Mir-1  Bge-Mir-1  Bla-Mir-1  Cbr-Mir-1  Cel-Mir-1  Cin-Mir-1  Cte-Mir-1  Dan-Mir-1  Dgr-Mir-1  Dlo-Mir-1  Dma-Mir-1  Dme-Mir-1  Dmo-Mir-1  Dpu-Mir-1  Dsi-Mir-1  Dya-Mir-1  Eba-Mir-1  Egr-Mir-1  Esc-Mir-1  Gpa-Mir-1  Gsa-Mir-1  Gsp-Mir-1  Hme-Mir-1  Hmi-Mir-1  Hru-Mir-1  Isc-Mir-1  Lan-Mir-1  Lgi-Mir-1  Lhy-Mir-1  Llo-Mir-1  Mgi-Mir-1  Mom-Mir-1  Obi-Mir-1  Ofu-Mir-1  Ovu-Mir-1  Pau-Mir-1  Pca-Mir-1  Pcr-Mir-1  Pdu-Mir-1  Pfl-Mir-1  Ple-Mir-1  Pmi-Mir-1  Rph-Mir-1  Sko-Mir-1  Sma-Mir-1  Sne-Mir-1  Snu-Mir-1  Spu-Mir-1  Sro-Mir-1  Tca-Mir-1  Tur-Mir-1  War-Mir-1  Xbo-Mir-1 
Node of Origin (locus) E. fetida
Node of Origin (family) Bilateria
Genome context
(Efe_combined)		 Efet.01.1616378: 99-157 [+]
Seed GGAAUGU
Precursor
(pre-Mir +30nt flank)		 
GAGGAAUGCUGUUGAGAGACAACGAAGUUGACAUACUUCUCCACAGACCAUAGUGACAAUUGAUUUAUGGAAUGUAAAGAAGUAUGUGGCGUUCGUGUGCAACACUUCAGUCACCUAUG
Get precursor sequence
Structure
        10           20         30        40        50         
GAGGAAUGCUGUUGAGAG---|  A    -   G          CC   GA     GUGACA 
                     ACA CGAA GUU ACAUACUUCU  ACA  CCAUA      \
                     UGU GCUU CGG UGUAUGAAGA  UGU  GGUAU      A
GUAUCCACUGACUUCACAACG^  -    G   -          AA   AA     UUAGUU 
       110       100         90         80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
To
Star sequence

Efe-Mir-1-P9_5p*
mirBase accessionNone
Sequence 
0- ACAUACUUCUCCACAGACCAUA -22
Get sequence
Mature sequence

Efe-Mir-1-P9_3p
mirBase accessionNone
Sequence 
37- UGGAAUGUAAAGAAGUAUGUGG -59
Get sequence