| MirGeneDB ID | Csc-Mir-1-P18a |
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| Family name |
MIR-1 (all species) |
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| Seed |
GGAAUGU |
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| Species |
Arizona bark scorpion (Centruroides sculpturatus) |
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| MiRBase ID |
|
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| Paralogues |
Csc-Mir-1-P18b
Csc-Mir-1-P19
|
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| Orthologues |
Aae-Mir-1
Asu-Mir-1
Bfl-Mir-1
Bge-Mir-1
Bla-Mir-1
Cbr-Mir-1
Cel-Mir-1
Cgi-Mir-1
Cin-Mir-1
Cte-Mir-1
Dan-Mir-1
Dma-Mir-1
Dme-Mir-1
Dmo-Mir-1
Dpu-Mir-1
Dsi-Mir-1
Dya-Mir-1
Esc-Mir-1
Hme-Mir-1
Isc-Mir-1
Lan-Mir-1
Lgi-Mir-1
Obi-Mir-1
Ovu-Mir-1
Pfl-Mir-1
Pmi-Mir-1
Sko-Mir-1
Spu-Mir-1
Tca-Mir-1
Xbo-Mir-1
|
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| Node of Origin (locus) |
C. sculpturatus
|
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| Node of Origin (family) |
Bilateria
|
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Genome context
(GCF_000671375.1_CSC) |
NW_019386523.1: 39142-39203 [+]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
CCCGAGACAGAAGACAGCCUGGACGGGACUCCAUUCUUCCUUACUUCCCAUAUCUGCCGCCGAUGCUGUAUGGAAUGUAAAGAAGUAUGGAGCCUCGGCCACGGCCGUUCGUCGCUGGACCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CCCGAGACAGAAGACAG- -| A A U C UUC UCUGCCG
CC UGG CGGG CUCCAU CUUC UUAC CCAUA C
GG ACC GCUC GAGGUA GAAG AAUG GGUAU C
ACCAGGUCGCUGCUUGCC C^ G C U A UAA GUCGUAG
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Csc-Mir-1-P18a_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CCAUUCUUCCUUACUUCCCAUA -22
Get sequence
|
|---|
| Mature sequence |
Csc-Mir-1-P18a_3p |
| mirBase accession | None |
|---|
| Sequence |
40- UGGAAUGUAAAGAAGUAUGGAG -62
Get sequence
|
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