MirGeneDB

MirGeneDB ID

Cgi-Mir-219

Family name MIR-219 (all species)
Seed GAACUGU
Species Pacific oyster (Crassostrea gigas)
MiRBase ID
Paralogues
Orthologues Aae-Mir-219  Aca-Mir-219-P1  Aca-Mir-219-P2  Ami-Mir-219-P1  Ami-Mir-219-P2  Bfl-Mir-219  Bge-Mir-219  Bta-Mir-219-P1  Bta-Mir-219-P2  Bta-Mir-219-P2-as  Cfa-Mir-219-P1  Cfa-Mir-219-P2  Cfa-Mir-219-P2-as  Cin-Mir-219  Cli-Mir-219-P2  Cpi-Mir-219-P1  Cpi-Mir-219-P2  Cpo-Mir-219-P1  Cpo-Mir-219-P2  Cpo-Mir-219-P2-as  Cte-Mir-219  Dan-Mir-219  Dme-Mir-219  Dmo-Mir-219  Dno-Mir-219-P1  Dno-Mir-219-P2  Dno-Mir-219-P2-as  Dpu-Mir-219  Dre-Mir-219-P1a  Dre-Mir-219-P2a  Dre-Mir-219-P2b  Efe-Mir-219-P3  Efe-Mir-219-P4  Efe-Mir-219-P5  Ete-Mir-219-P1  Ete-Mir-219-P2  Gga-Mir-219-P2  Hsa-Mir-219-P1  Hsa-Mir-219-P2  Hsa-Mir-219-P2-as  Isc-Mir-219  Lan-Mir-219  Mdo-Mir-219-P1  Mdo-Mir-219-P2  Mml-Mir-219-P1  Mml-Mir-219-P2  Mml-Mir-219-P2-as  Mmu-Mir-219-P1  Mmu-Mir-219-P1-as  Mmu-Mir-219-P2  Mmu-Mir-219-P2-as  Oan-Mir-219-P2  Ocu-Mir-219-P1  Ocu-Mir-219-P2  Ocu-Mir-219-P2-as  Pfl-Mir-219  Pmi-Mir-219  Rno-Mir-219-P1  Rno-Mir-219-P2  Rno-Mir-219-P2-as  Sha-Mir-219-P1  Sha-Mir-219-P2  Sko-Mir-219  Spu-Mir-219  Sto-Mir-219-P1-v1  Sto-Mir-219-P1-v2  Sto-Mir-219-P2  Tca-Mir-219  Tgu-Mir-219-P2  Xtr-Mir-219-P2 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(CGI_GCA_000297895.1)
scaffold517: 74689-74747 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
ACAGAAGCAGUUAGUUCAGUUUUCAGGCCAUGAUUGUCCAAACGCAAUUCUUGUGAAGGUUAAGCCAAGAACUGUGUAUGGACAUCAGUGCUUGGGGCUUAUACAUCAGAAGGAAUGUC
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Structure
        10           20        30        40        50         
ACAGAAGCAGUUAGUUC---| U UU     CA    U     A     A      UGAAG 
                    AG U  CAGGC  UGAU GUCCA ACGCA UUCUUG     G
                    UC G  GUUCG  ACUA CAGGU UGUGU AAGAAC     U
CUGUAAGGAAGACUACAUAU^ - GG     UG    -     A     C      CGAAU 
       110       100         90         80        70        60
Deep sequencing
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CommentThere is a second Drosha site -1 on the 5p arm relative to what is annotated here.
3' NTU No
MotifsNo
Tissue expression
 +
A- D- D- Eg F- Gi He Ju L- Ma Ma Pe Re Sp Um Ea Fe Ha La Ma
Star sequence

Cgi-Mir-219_5p*

MirBase accessionNone
Sequence
0- UGAUUGUCCAAACGCAAUUCUUG -23
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Mature sequence

Cgi-Mir-219_3p

MirBase accessionNone
Sequence
37- AGAACUGUGUAUGGACAUCAGU -59
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