MirGeneDB 3.0
MirGeneDB ID

Sto-Mir-219-P3

Family name MIR-219 (all species)
Species Cloudy Catshark (Scyliorhinus torazame)
MiRBase ID
Paralogues Sto-Mir-219-P2  Sto-Mir-219-P3-v1 
Orthologues Aae-Mir-219  Aca-Mir-219-P3  Aga-Mir-219  Agr-Mir-219  Ami-Mir-219-P3  Bfl-Mir-219  Bge-Mir-219  Bko-Mir-219  Bla-Mir-219  Bpl-Mir-219  Bta-Mir-219-P3  Cfa-Mir-219-P3  Cin-Mir-219  Cja-Mir-219-P3  Cmi-Mir-219-P3  Cpi-Mir-219-P3  Cpo-Mir-219-P3  Csc-Mir-219  Cte-Mir-219  Dan-Mir-219  Dgr-Mir-219  Dlo-Mir-219  Dma-Mir-219  Dme-Mir-219  Dmo-Mir-219  Dno-Mir-219-P3  Dpu-Mir-219  Dre-Mir-219-P3a  Dsi-Mir-219  Dya-Mir-219  Eba-Mir-219  Eca-Mir-219-P3  Egr-Mir-219  Esc-Mir-219  Ete-Mir-219-P3  Gja-Mir-219-P3  Gmo-Mir-219-P3a  Gmo-Mir-219-P3b  Gpa-Mir-219  Gsa-Mir-219  Gsp-Mir-219  Hmi-Mir-219  Hru-Mir-219  Hsa-Mir-219-P3  Isc-Mir-219  Laf-Mir-219-P3  Lan-Mir-219  Lch-Mir-219-P3  Llo-Mir-219  Mal-Mir-219-P3a  Mal-Mir-219-P3b  Mdo-Mir-219-P3  Mgi-Mir-219  Mml-Mir-219-P3  Mmr-Mir-219-P3  Mmu-Mir-219-P3  Mmu-Mir-219-P3-as  Mom-Mir-219  Mun-Mir-219-P3-v1  Neu-Mir-219-P3  Obi-Mir-219  Ocu-Mir-219-P3  Ofu-Mir-219  Ovu-Mir-219  Pab-Mir-219-P3  Pau-Mir-219  Pbv-Mir-219-P3  Pca-Mir-219  Pcr-Mir-219  Pfl-Mir-219  Pmi-Mir-219  Pve-Mir-219  Rno-Mir-219-P3  Rph-Mir-219  Sha-Mir-219-P3  Sko-Mir-219  Sma-Mir-219  Sne-Mir-219  Snu-Mir-219  Spt-Mir-219-P3  Spu-Mir-219  Sro-Mir-219  Tca-Mir-219  Tni-Mir-219-P3a  Tni-Mir-219-P3b  Tur-Mir-219  War-Mir-219  Xbo-Mir-219 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCA_003427355_STO_add)		 BFAA01017937.1: 11339-11405 [+]
Clustered miRNAs
(< 50kb from Mir-219-P3-v2)		 Mir-219-P3-v1 BFAA01017937.1: 11339-11405 [+]
Mir-219-P3-v2 BFAA01017937.1: 11339-11405 [+]
Variant

Sto-Mir-219-P3-v2
Seed GAUUGUC
Precursor
(pre-Mir +30nt flank)		 
GGGGUGAAAAACCUUAGAAAUUCUCGCUAUUGAUUGUCCAAACGCAAUUCUUGUGUUUUUCCAAAUCGGACCCCGAGAAUUGUAGAUGGACAUCCUUAGCUGGAUUUUCACAUUCUUCUUUCGCGGU
Get precursor sequence
Structure
        10           20        30        40        50        60   
GGGGUGAAAAACCUUAG---|     UC    UU   U     AAC          UGUUUUUCC 
                    AAAUUC  GCUA  GAU GUCCA   GCAAUUCUUG         A
                    UUUAGG  CGAU  CUA CAGGU   UGUUAAGAGC         A
UGGCGCUUUCUUCUUACACU^     U-    UC   -     AGA          CCCAGGCUA 
     120       110        100         90        80        70
Deep sequencing
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CommentThe MIR-219 family shows substantial variation of arm-usage and is currently, across all species, considered a co-mature.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
To
Mature sequence

Sto-Mir-219-P3-v2_5p
mirBase accessionNone
Sequence 
0- UGAUUGUCCAAACGCAAUUCUUG -23
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Co-mature sequence

Sto-Mir-219-P3-v2_3p
mirBase accessionNone
Sequence 
45- AGAAUUGUAGAUGGACAUCCUU -67
Get sequence
Variant

Sto-Mir-219-P3-v1
Seed GAUUGUC
Precursor
(pre-Mir +30nt flank)		 
GGGGUGAAAAACCUUAGAAAUUCUCGCUAUUGAUUGUCCAAACGCAAUUCUUGUGUUUUUCCAAAUCGGACCCCGAGAAUUGUAGAUGGACAUCCUUAGCUGGAUUUUCACAUUCUUCUUUCGCGGU
Get precursor sequence
Structure
        10           20        30        40        50        60   
GGGGUGAAAAACCUUAG---|     UC    UU   U     AAC          UGUUUUUCC 
                    AAAUUC  GCUA  GAU GUCCA   GCAAUUCUUG         A
                    UUUAGG  CGAU  CUA CAGGU   UGUUAAGAGC         A
UGGCGCUUUCUUCUUACACU^     U-    UC   -     AGA          CCCAGGCUA 
     120       110        100         90        80        70
Deep sequencing
Go to detailed chart
CommentThe MIR-219 family shows substantial variation of arm-usage and is currently, across all species, considered a co-mature.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Mature sequence

Sto-Mir-219-P3-v1_5p
mirBase accessionNone
Sequence 
0- UGAUUGUCCAAACGCAAUUCUUGU -24
Get sequence
Co-mature sequence

Sto-Mir-219-P3-v1_3p
mirBase accessionNone
Sequence 
44- GAGAAUUGUAGAUGGACAUCCUU -67
Get sequence