MirGeneDB 2.1

MirGeneDB ID

Sme-Mir-219-P10

Family name MIR-219 (all species)
Seed GAUUGUC
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-219
Paralogues Sme-Mir-219-P11 
Orthologues Aae-Mir-219  Bfl-Mir-219  Bge-Mir-219  Bla-Mir-219  Cgi-Mir-219  Cin-Mir-219  Csc-Mir-219  Cte-Mir-219  Dan-Mir-219  Dma-Mir-219  Dme-Mir-219  Dmo-Mir-219  Dpu-Mir-219  Dsi-Mir-219  Dya-Mir-219  Esc-Mir-219  Isc-Mir-219  Lan-Mir-219  Obi-Mir-219  Ovu-Mir-219  Pfl-Mir-219  Pmi-Mir-219  Sko-Mir-219  Spu-Mir-219  Tca-Mir-219  Xbo-Mir-219 
Node of Origin (locus) S. mediterranea
Node of Origin (family) Bilateria
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)
NNSW01000387_dd_Smes_g4_387: 101916-101988 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCGUAAGUUUGACGUACGGUAAUUUAUUGCUGAUUGUCCAUACGCAGUUCUCAAGGUCUAGAAUCGACGAAUUGCCGUUUAAGAAUUGCGAAUGGUCAUCAACAAUAAUUGCUGAAACCAUCAUUUGUAUCAC
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Structure
        10           20        30        40        50        60      
GCGUAAGUUUGACGUAC---|      U    C    U U    A         CAAGGUCUAGAAUC 
                    GGUAAUU AUUG UGAU G CCAU CGCAGUUCU              G
                    UCGUUAA UAAC ACUA C GGUA GCGUUAAGA              A
CACUAUGUUUACUACCAAAG^      -    A    - U    A         AUUUGCCGUUAAGC 
 130       120       110        100         90        80        70
Deep sequencing
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CommentThe MIR-219 family shows substantial variation of arm-usage and is currently, across all species, considered a co-mature.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Se Se Se Se Se Se Se Se Se Se Se Se Ne Wh Wh Wh
Mature sequence

Sme-Mir-219-P10_5p

mirBase accessionMIMAT0004006
Sequence
0- UGAUUGUCCAUACGCAGUUCUCA -23
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Co-mature sequence

Sme-Mir-219-P10_3p

mirBase accessionMIMAT0012118
Sequence
51- AGAAUUGCGAAUGGUCAUCAAC -73
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