MirGeneDB 2.1
MirGeneDB ID

Spu-Mir-103

Family name MIR-103 (all species)
Seed GCAGCAU
Species Purple sea urchin (Strongylocentrotus purpuratus)
MiRBase ID spu-mir-2013
Paralogues
Orthologues Aca-Mir-103-P1  Aca-Mir-103-P2  Aca-Mir-103-P4  Ami-Mir-103-P1  Ami-Mir-103-P2  Ami-Mir-103-P4  Bfl-Mir-103-P5  Bfl-Mir-103-P6  Bfl-Mir-103-P7  Bfl-Mir-103-P8  Bla-Mir-103-P5  Bla-Mir-103-P6  Bla-Mir-103-P7  Bla-Mir-103-P8  Bta-Mir-103-P1  Bta-Mir-103-P2  Bta-Mir-103-P4  Cfa-Mir-103-P1  Cfa-Mir-103-P2  Cfa-Mir-103-P4  Cli-Mir-103-P1  Cli-Mir-103-P2  Cli-Mir-103-P4  Cmi-Mir-103-P1  Cmi-Mir-103-P2  Cmi-Mir-103-P4  Cpi-Mir-103-P1  Cpi-Mir-103-P2  Cpi-Mir-103-P4  Cpo-Mir-103-P1  Cpo-Mir-103-P2  Cpo-Mir-103-P4  Dno-Mir-103-P1  Dno-Mir-103-P2  Dno-Mir-103-P4  Dre-Mir-103-P1a  Dre-Mir-103-P1b  Dre-Mir-103-P2a  Dre-Mir-103-P2b  Ete-Mir-103-P1  Ete-Mir-103-P2  Ete-Mir-103-P4  Gga-Mir-103-P1  Gga-Mir-103-P2  Gga-Mir-103-P4  Gja-Mir-103-P1  Gja-Mir-103-P2  Gja-Mir-103-P4  Gmo-Mir-103-P2a  Gmo-Mir-103-P2b  Hsa-Mir-103-P1  Hsa-Mir-103-P2  Hsa-Mir-103-P4  Lch-Mir-103-P1  Lch-Mir-103-P2  Lch-Mir-103-P4  Loc-Mir-103-P1  Loc-Mir-103-P2  Loc-Mir-103-P4  Mal-Mir-103-P1a  Mal-Mir-103-P2a  Mal-Mir-103-P2b  Mdo-Mir-103-P1  Mdo-Mir-103-P2  Mdo-Mir-103-P4  Mml-Mir-103-P1  Mml-Mir-103-P2  Mml-Mir-103-P4  Mmu-Mir-103-P1  Mmu-Mir-103-P2  Mmu-Mir-103-P4  Mun-Mir-103-P1  Mun-Mir-103-P2  Mun-Mir-103-P4  Oan-Mir-103-P1  Oan-Mir-103-P2  Oan-Mir-103-P4  Ocu-Mir-103-P1  Ocu-Mir-103-P2  Ocu-Mir-103-P4  Pbv-Mir-103-P1  Pbv-Mir-103-P2  Pbv-Mir-103-P4  Pfl-Mir-103  Pma-Mir-103-o1  Pma-Mir-103-o2  Pmi-Mir-103  Rno-Mir-103-P1  Rno-Mir-103-P2  Rno-Mir-103-P4  Sha-Mir-103-P1  Sha-Mir-103-P2  Sha-Mir-103-P4  Sko-Mir-103  Spt-Mir-103-P1  Spt-Mir-103-P2  Spt-Mir-103-P4  Sto-Mir-103-P1  Sto-Mir-103-P2  Sto-Mir-103-P4  Tgu-Mir-103-P1  Tgu-Mir-103-P2  Tgu-Mir-103-P4  Tni-Mir-103-P1a  Tni-Mir-103-P2a  Tni-Mir-103-P2b  Xbo-Mir-103  Xla-Mir-103-P1c  Xla-Mir-103-P1d  Xla-Mir-103-P2c  Xla-Mir-103-P2d  Xla-Mir-103-P4  Xtr-Mir-103-P1  Xtr-Mir-103-P2  Xtr-Mir-103-P4 
Node of Origin (locus) Deuterostomia
Node of Origin (family) Deuterostomia
Genome context
(Spur_5.0)		 AAGJ06000002.1: 1770908-1770972 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
ACGAAGCUGUCAUUGAUGUCUACUGUUCUACGCCGCUACAUCUAGUUGCAUUGUGACGUCUGUUUCAGGGAAAUGCAGCAUGAUGUAGUGGUGUAGCUCAGUAAGACCAUUCCAACCAGCCGGCA
Get precursor sequence
Structure
        10         20         30        40        50        60  
ACGAAGCUGUCAUUGAU-   -|    UU               UA        GUGACGUCU 
                  GUC UACUG  CUACGCCGCUACAUC  GUUGCAUU         \
                  CAG AUGAC  GAUGUGGUGAUGUAG  CGACGUAA         G
ACGGCCGACCAACCUUAC   A^    UC               UA        AGGGACUUU 
   120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
32 Bl Eg Ga Ov Pl To To
Star sequence

Spu-Mir-103_5p* (predicted)
mirBase accessionNone
Sequence 
0- CGCCGCUACAUCUAGUUGCAUU -22
Get sequence
Mature sequence

Spu-Mir-103_3p
mirBase accessionMIMAT0009742
Sequence 
43- UGCAGCAUGAUGUAGUGGUGUA -65
Get sequence