MirGeneDB 2.1

MirGeneDB ID

Tni-Mir-103-P1a

Family name MIR-103 (all species)
Seed GCAGCAU
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-107
Paralogues Tni-Mir-103-P2a  Tni-Mir-103-P2b 
Orthologues Aca-Mir-103-P1  Ami-Mir-103-P1  Bta-Mir-103-P1  Cfa-Mir-103-P1  Cli-Mir-103-P1  Cmi-Mir-103-P1  Cpi-Mir-103-P1  Cpo-Mir-103-P1  Dno-Mir-103-P1  Dre-Mir-103-P1a  Ete-Mir-103-P1  Gga-Mir-103-P1  Gja-Mir-103-P1  Hsa-Mir-103-P1  Lch-Mir-103-P1  Loc-Mir-103-P1  Mal-Mir-103-P1a  Mdo-Mir-103-P1  Mml-Mir-103-P1  Mmu-Mir-103-P1  Mun-Mir-103-P1  Oan-Mir-103-P1  Ocu-Mir-103-P1  Pbv-Mir-103-P1  Pfl-Mir-103  Pma-Mir-103-o1  Pmi-Mir-103  Rno-Mir-103-P1  Sha-Mir-103-P1  Sko-Mir-103  Spt-Mir-103-P1  Spu-Mir-103  Sto-Mir-103-P1  Tgu-Mir-103-P1  Xbo-Mir-103  Xtr-Mir-103-P1 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Deuterostomia
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)
17: 10614424-10614483 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCUUGAGUUGCCUGUUUUCUGUCUGCUGUGAGCUUCUUUACAGUGUUGCCUUGUGGCAUGGCGAUCAAGCAGCAUUGUACAGGGCUAUCACCGCACACAGAGCUGCACCUUACACACGCG
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Structure
        10          20        30          40        50         
UCUUGAGUUGCCUGUUU--     C   U    --|  U  U           C   UGGCA 
                   UCUGU UGC GUGA  GCU CU UACAGUGUUGC UUG     U
                   AGACA ACG CACU  CGG GA AUGUUACGACG AAC     G
GCGCACACAUUCCACGUCG     C   C    AU^  -  C           -   UAGCG 
.       110       100        90         80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Sp Sp Sp To
Star sequence

Tni-Mir-103-P1a_5p*

mirBase accessionNone
Sequence
0- AGCUUCUUUACAGUGUUGCCUUG -23
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Mature sequence

Tni-Mir-103-P1a_3p

mirBase accessionMIMAT0003044
Sequence
37- AGCAGCAUUGUACAGGGCUAUCA -60
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