Mir-103-P1a

MirGeneDB ID

Tni-Mir-103-P1a

Family name

MIR-103 (all species)

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

tni-mir-107

Paralogues

Tni-Mir-103-P2a Tni-Mir-103-P2b

Orthologues

Aca-Mir-103-P1 Ami-Mir-103-P1 Bta-Mir-103-P1 Cfa-Mir-103-P1 Cja-Mir-103-P1 Cli-Mir-103-P1 Cmi-Mir-103-P1 Cpi-Mir-103-P1 Cpo-Mir-103-P1 Dno-Mir-103-P1 Dre-Mir-103-P1a Eca-Mir-103-P1 Ete-Mir-103-P1 Gga-Mir-103-P1 Gja-Mir-103-P1 Hmi-Mir-103 Hsa-Mir-103-P1 Laf-Mir-103-P1 Lch-Mir-103-P1 Loc-Mir-103-P1 Mal-Mir-103-P1a Mdo-Mir-103-P1 Mml-Mir-103-P1 Mmr-Mir-103-P1 Mmu-Mir-103-P1 Mun-Mir-103-P1 Oan-Mir-103-P1 Ocu-Mir-103-P1 Pab-Mir-103-P1 Pbv-Mir-103-P1 Pfl-Mir-103 Pma-Mir-103-o1 Pmi-Mir-103 Rno-Mir-103-P1 Sha-Mir-103-P1 Sko-Mir-103 Spt-Mir-103-P1 Spu-Mir-103 Sro-Mir-103 Sto-Mir-103-P1 Tgu-Mir-103-P1 Xbo-Mir-103 Xtr-Mir-103-P1

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Bilateria

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

17: 10614424-10614483 [+] UCSC Ensembl

Seed

GCAGCAU

Precursor
(pre-Mir +30nt flank)

UCUUGAGUUGCCUGUUUUCUGUCUGCUGUGAGCUUCUUUACAGUGUUGCCUUGUGGCAUGGCGAUCAAGCAGCAUUGUACAGGGCUAUCACCGCACACAGAGCUGCACCUUACACACGCG

Get precursor sequence

Structure

        10          20        30          40        50         
UCUUGAGUUGCCUGUUU--     C   U    --|  U  U           C   UGGCA 
                   UCUGU UGC GUGA  GCU CU UACAGUGUUGC UUG     U
                   AGACA ACG CACU  CGG GA AUGUUACGACG AAC     G
GCGCACACAUUCCACGUCG     C   C    AU^  -  C           -   UAGCG 
.       110       100        90         80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Sp	Sp	Sp	To

Star sequence

Tni-Mir-103-P1a_5p*

mirBase accession

None

Sequence

0- AGCUUCUUUACAGUGUUGCCUUG -23

Get sequence

Mature sequence

Tni-Mir-103-P1a_3p

mirBase accession

MIMAT0003044

Sequence

37- AGCAGCAUUGUACAGGGCUAUCA -60

Get sequence