| MirGeneDB ID | Lch-Mir-103-P1 |
|---|---|
| Family name | MIR-103 (all species) |
| Seed | GCAGCAU |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-103-P2 Lch-Mir-103-P4 |
| Orthologues | Aca-Mir-103-P1 Ami-Mir-103-P1 Bta-Mir-103-P1 Cfa-Mir-103-P1 Cli-Mir-103-P1 Cmi-Mir-103-P1 Cpi-Mir-103-P1 Cpo-Mir-103-P1 Dno-Mir-103-P1 Dre-Mir-103-P1a Dre-Mir-103-P1b Ete-Mir-103-P1 Gga-Mir-103-P1 Gja-Mir-103-P1 Hsa-Mir-103-P1 Loc-Mir-103-P1 Mal-Mir-103-P1a Mdo-Mir-103-P1 Mml-Mir-103-P1 Mmu-Mir-103-P1 Mun-Mir-103-P1 Oan-Mir-103-P1 Ocu-Mir-103-P1 Pbv-Mir-103-P1 Pfl-Mir-103 Pma-Mir-103-o1 Pmi-Mir-103 Rno-Mir-103-P1 Sha-Mir-103-P1 Sko-Mir-103 Spt-Mir-103-P1 Spu-Mir-103 Sto-Mir-103-P1 Tgu-Mir-103-P1 Tni-Mir-103-P1a Xbo-Mir-103 Xla-Mir-103-P1c Xla-Mir-103-P1d Xtr-Mir-103-P1 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Deuterostomia |
| Genome context (LatCha1_add) |
JH128928.1: 263589-263648 [-] Ensembl |
| Precursor (pre-Mir +30nt flank) | CAAGACAUCAUUGGAAUUCUCUGUGCUUUCAGCUUCUUUACAGUGUUGCCUUGUGGCAUGAGGAUCAAGCAGCAUUGUACAGGGCUAUCAAAGCACUGAGACCAACAGCGCAGACUACAGGet precursor sequence |
| Structure | 10 20 30 40 50 CAAGACAUCAUUGGAAU-- U C--| U U C UGGCA UCUC GUGCUUU AGCU CU UACAGUGUUGC UUG U AGAG CACGAAA UCGG GA AUGUUACGACG AAC G GACAUCAGACGCGACAACC U CUA^ - C - UAGGA . 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Lch-Mir-103-P1_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- AGCUUCUUUACAGUGUUGCCUUG -23
Get sequence
|
| Mature sequence | Lch-Mir-103-P1_3p (predicted) |
| mirBase accession | None |
| Sequence |
37- AGCAGCAUUGUACAGGGCUAUCA -60
Get sequence
|
