MirGeneDB ID | Sto-Mir-103-P1 |
Family name |
MIR-103 (all species) |
Seed |
GCAGCAU |
Species |
Cloudy Catshark (Scyliorhinus torazame) |
MiRBase ID |
|
Paralogues |
Sto-Mir-103-P2
Sto-Mir-103-P3
|
Orthologues |
Aca-Mir-103-P1
Ami-Mir-103-P1
Bfl-Mir-103
Bta-Mir-103-P1
Cfa-Mir-103-P1
Cli-Mir-103-P1
Cpi-Mir-103-P1
Cpo-Mir-103-P1
Dno-Mir-103-P1
Ete-Mir-103-P1
Gga-Mir-103-P1
Hsa-Mir-103-P1
Mdo-Mir-103-P1
Mml-Mir-103-P1
Mmu-Mir-103-P1
Oan-Mir-103-P1
Ocu-Mir-103-P1
Pfl-Mir-103
Pmi-Mir-103
Rno-Mir-103-P1
Sha-Mir-103-P1
Sko-Mir-103
Spu-Mir-103
Tgu-Mir-103-P1
Xtr-Mir-103-P1
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Deuterostomia
|
Genome context (miRNA_loci_genome) |
BFAA01001934.1: 384944-385003 [+]
|
Precursor (pre-Mir +30nt flank) |
AUGAAAGAACUUGAAAUUCUCUGUACUUUCGGCUUCUUUACAGUGCUGCCUUGUGACGUGAAGAUCAAGCAGCAUUGUACAGGGCUAUGAAAGCUCAGAGACUUCACAUCAUUGAACAAU
Get precursor sequence
|
Structure | 10 20 30 40 50
AUGAAAGAACUUGAAAU-- UA --| U U C UGACG
UCUCUG CUUUC GGCU CU UACAGUGCUGC UUG U
AGAGAC GAAAG UCGG GA AUGUUACGACG AAC G
UAACAAGUUACUACACUUC UC UA^ - C - UAGAA
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Sto-Mir-103-P1_5p* |
MirBase accession | None |
Sequence |
0- GGCUUCUUUACAGUGCUGCCUUG -23
Get sequence
|
Mature sequence |
Sto-Mir-103-P1_3p |
MirBase accession | None |
Sequence |
37- AGCAGCAUUGUACAGGGCUAUGA -60
Get sequence
|