MirGeneDB

MirGeneDB ID

Sto-Mir-103-P1

Family name MIR-103 (all species)
Seed GCAGCAU
Species Cloudy Catshark (Scyliorhinus torazame)
MiRBase ID
Paralogues Sto-Mir-103-P2  Sto-Mir-103-P3 
Orthologues Aca-Mir-103-P1  Ami-Mir-103-P1  Bfl-Mir-103  Bta-Mir-103-P1  Cfa-Mir-103-P1  Cli-Mir-103-P1  Cpi-Mir-103-P1  Cpo-Mir-103-P1  Dno-Mir-103-P1  Ete-Mir-103-P1  Gga-Mir-103-P1  Hsa-Mir-103-P1  Mdo-Mir-103-P1  Mml-Mir-103-P1  Mmu-Mir-103-P1  Oan-Mir-103-P1  Ocu-Mir-103-P1  Pfl-Mir-103  Pmi-Mir-103  Rno-Mir-103-P1  Sha-Mir-103-P1  Sko-Mir-103  Spu-Mir-103  Tgu-Mir-103-P1  Xtr-Mir-103-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Deuterostomia
Genome context
(miRNA_loci_genome)
BFAA01001934.1: 384944-385003 [+]
Precursor
(pre-Mir +30nt flank)
AUGAAAGAACUUGAAAUUCUCUGUACUUUCGGCUUCUUUACAGUGCUGCCUUGUGACGUGAAGAUCAAGCAGCAUUGUACAGGGCUAUGAAAGCUCAGAGACUUCACAUCAUUGAACAAU
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Structure
        10          20        30          40        50         
AUGAAAGAACUUGAAAU--      UA     --|   U  U           C   UGACG 
                   UCUCUG  CUUUC  GGCU CU UACAGUGCUGC UUG     U
                   AGAGAC  GAAAG  UCGG GA AUGUUACGACG AAC     G
UAACAAGUUACUACACUUC      UC     UA^   -  C           -   UAGAA 
.       110       100        90         80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Sto-Mir-103-P1_5p*

MirBase accessionNone
Sequence
0- GGCUUCUUUACAGUGCUGCCUUG -23
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Mature sequence

Sto-Mir-103-P1_3p

MirBase accessionNone
Sequence
37- AGCAGCAUUGUACAGGGCUAUGA -60
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