MirGeneDB 2.1

MirGeneDB ID

Pmi-Mir-103

Family name MIR-103 (all species)
Seed GCAGCAU
Species Bat starfish (Patiria miniata)
MiRBase ID pmi-mir-2013
Paralogues
Orthologues Aca-Mir-103-P1  Aca-Mir-103-P2  Aca-Mir-103-P4  Ami-Mir-103-P1  Ami-Mir-103-P2  Ami-Mir-103-P4  Bfl-Mir-103-P5  Bfl-Mir-103-P6  Bfl-Mir-103-P7  Bfl-Mir-103-P8  Bla-Mir-103-P5  Bla-Mir-103-P6  Bla-Mir-103-P7  Bla-Mir-103-P8  Bta-Mir-103-P1  Bta-Mir-103-P2  Bta-Mir-103-P4  Cfa-Mir-103-P1  Cfa-Mir-103-P2  Cfa-Mir-103-P4  Cli-Mir-103-P1  Cli-Mir-103-P2  Cli-Mir-103-P4  Cmi-Mir-103-P1  Cmi-Mir-103-P2  Cmi-Mir-103-P4  Cpi-Mir-103-P1  Cpi-Mir-103-P2  Cpi-Mir-103-P4  Cpo-Mir-103-P1  Cpo-Mir-103-P2  Cpo-Mir-103-P4  Dno-Mir-103-P1  Dno-Mir-103-P2  Dno-Mir-103-P4  Dre-Mir-103-P1a  Dre-Mir-103-P1b  Dre-Mir-103-P2a  Dre-Mir-103-P2b  Ete-Mir-103-P1  Ete-Mir-103-P2  Ete-Mir-103-P4  Gga-Mir-103-P1  Gga-Mir-103-P2  Gga-Mir-103-P4  Gja-Mir-103-P1  Gja-Mir-103-P2  Gja-Mir-103-P4  Gmo-Mir-103-P2a  Gmo-Mir-103-P2b  Hsa-Mir-103-P1  Hsa-Mir-103-P2  Hsa-Mir-103-P4  Lch-Mir-103-P1  Lch-Mir-103-P2  Lch-Mir-103-P4  Loc-Mir-103-P1  Loc-Mir-103-P2  Loc-Mir-103-P4  Mal-Mir-103-P1a  Mal-Mir-103-P2a  Mal-Mir-103-P2b  Mdo-Mir-103-P1  Mdo-Mir-103-P2  Mdo-Mir-103-P4  Mml-Mir-103-P1  Mml-Mir-103-P2  Mml-Mir-103-P4  Mmu-Mir-103-P1  Mmu-Mir-103-P2  Mmu-Mir-103-P4  Mun-Mir-103-P1  Mun-Mir-103-P2  Mun-Mir-103-P4  Oan-Mir-103-P1  Oan-Mir-103-P2  Oan-Mir-103-P4  Ocu-Mir-103-P1  Ocu-Mir-103-P2  Ocu-Mir-103-P4  Pbv-Mir-103-P1  Pbv-Mir-103-P2  Pbv-Mir-103-P4  Pfl-Mir-103  Pma-Mir-103-o1  Pma-Mir-103-o2  Rno-Mir-103-P1  Rno-Mir-103-P2  Rno-Mir-103-P4  Sha-Mir-103-P1  Sha-Mir-103-P2  Sha-Mir-103-P4  Sko-Mir-103  Spt-Mir-103-P1  Spt-Mir-103-P2  Spt-Mir-103-P4  Spu-Mir-103  Sto-Mir-103-P1  Sto-Mir-103-P2  Sto-Mir-103-P4  Tgu-Mir-103-P1  Tgu-Mir-103-P2  Tgu-Mir-103-P4  Tni-Mir-103-P1a  Tni-Mir-103-P2a  Tni-Mir-103-P2b  Xbo-Mir-103  Xla-Mir-103-P1c  Xla-Mir-103-P1d  Xla-Mir-103-P2c  Xla-Mir-103-P2d  Xla-Mir-103-P4  Xtr-Mir-103-P1  Xtr-Mir-103-P2  Xtr-Mir-103-P4 
Node of Origin (locus) Deuterostomia
Node of Origin (family) Deuterostomia
Genome context
(Pmin1)
JH783623.1: 1378-1440 [+]
Clustered miRNAs
(< 50kb from Mir-103)
Mir-22-o2 JH783623.1: 312-377 [+]
Mir-103 JH783623.1: 1378-1440 [+]
Precursor
(pre-Mir +30nt flank)
UGAGUUCAUCUCGUUUGCUCGCGUGUGCUUCAUUACUACAUUUGGCUGCAUUCUGUCCGAACCCAAGGAAAUGCAGCAUGAUGUAGUGGUGAAGUACGCCGGGCAUUUUGCUUCGAUUGGCUC
Get precursor sequence
Structure
        10           20        30        40        50        60 
UGAGUUCAUCUCGUUUG---|   C                    UG        CUGUCCGA 
                    CUCG GUGUGCUUCAUUACUACAUU  GCUGCAUU        \
                    GGGC CGCAUGAAGUGGUGAUGUAG  CGACGUAA        A
CUCGGUUAGCUUCGUUUUAC^   -                    UA        AGGAACCC 
 120       110       100         90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Em To
Star sequence

Pmi-Mir-103_5p*

mirBase accessionNone
Sequence
0- CAUUACUACAUUUGGCUGCAUU -22
Get sequence
Mature sequence

Pmi-Mir-103_3p

mirBase accessionMIMAT0032188
Sequence
41- UGCAGCAUGAUGUAGUGGUGAA -63
Get sequence