Mir-103-P2a

MirGeneDB ID

Dre-Mir-103-P2a

Family name

MIR-103 (all species)

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-103

Paralogues

Dre-Mir-103-P1a Dre-Mir-103-P1b Dre-Mir-103-P2b

Orthologues

Aca-Mir-103-P2 Ami-Mir-103-P2 Bta-Mir-103-P2 Cfa-Mir-103-P2 Cja-Mir-103-P2 Cli-Mir-103-P2 Cmi-Mir-103-P2 Cpi-Mir-103-P2 Cpo-Mir-103-P2 Dno-Mir-103-P2 Eca-Mir-103-P2 Ete-Mir-103-P2 Gga-Mir-103-P2 Gja-Mir-103-P2 Gmo-Mir-103-P2a Hmi-Mir-103 Hsa-Mir-103-P2 Laf-Mir-103-P2 Lch-Mir-103-P2 Loc-Mir-103-P2 Mal-Mir-103-P2a Mdo-Mir-103-P2 Mml-Mir-103-P2 Mmr-Mir-103-P2 Mmu-Mir-103-P2 Mun-Mir-103-P2 Neu-Mir-103-P2 Oan-Mir-103-P2 Ocu-Mir-103-P2 Pab-Mir-103-P2 Pbv-Mir-103-P2 Pfl-Mir-103 Pma-Mir-103-o2 Pmi-Mir-103 Rno-Mir-103-P2 Sha-Mir-103-P2 Sko-Mir-103 Spt-Mir-103-P2 Spu-Mir-103 Sro-Mir-103 Sto-Mir-103-P2 Tgu-Mir-103-P2 Tni-Mir-103-P2a Xbo-Mir-103 Xtr-Mir-103-P2

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Bilateria

Genome context
(danRer11)

chr13: 15223311-15223370 [+] UCSC Ensembl

Seed

GCAGCAU

Precursor
(pre-Mir +30nt flank)

GCUAAUGUGUUGUCUUUGCCCUGGUCUGUCAGCCUCUUUACGGUGCUGCCUUGUGGAAUCUGGAUCAAGCAGCAUUGUACAGGGCUAUGAGAGACCCGGGCCCGUCAGCUCCUGGAAAAC

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Structure

        10          20        30          40        50         
GCUAAUGUGUUGUCUUU--    U     G  --|   U  U           C   UGGAA 
                   GCCC GGUCU UC  AGCC CU UACGGUGCUGC UUG     U
                   CGGG CCAGA AG  UCGG GA AUGUUACGACG AAC     C
CAAAAGGUCCUCGACUGCC    C     G  UA^   -  C           -   UAGGU 
.       110       100        90         80        70         60

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Star sequence

Dre-Mir-103-P2a_5p*

mirBase accession

None

Sequence

0- AGCCUCUUUACGGUGCUGCCUUG -23

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Mature sequence

Dre-Mir-103-P2a_3p

mirBase accession

MIMAT0001816

Sequence

37- AGCAGCAUUGUACAGGGCUAUGA -60

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Proposed targets

TargetScanFish: dre-miR-103