MirGeneDB 2.1

MirGeneDB ID

Gmo-Mir-103-P2a

Family name MIR-103 (all species)
Seed GCAGCAU
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-103-1
Paralogues Gmo-Mir-103-P2b 
Orthologues Aca-Mir-103-P2  Ami-Mir-103-P2  Bta-Mir-103-P2  Cfa-Mir-103-P2  Cli-Mir-103-P2  Cmi-Mir-103-P2  Cpi-Mir-103-P2  Cpo-Mir-103-P2  Dno-Mir-103-P2  Dre-Mir-103-P2a  Ete-Mir-103-P2  Gga-Mir-103-P2  Gja-Mir-103-P2  Hsa-Mir-103-P2  Lch-Mir-103-P2  Loc-Mir-103-P2  Mal-Mir-103-P2a  Mdo-Mir-103-P2  Mml-Mir-103-P2  Mmu-Mir-103-P2  Mun-Mir-103-P2  Oan-Mir-103-P2  Ocu-Mir-103-P2  Pbv-Mir-103-P2  Pfl-Mir-103  Pma-Mir-103-o2  Pmi-Mir-103  Rno-Mir-103-P2  Sha-Mir-103-P2  Sko-Mir-103  Spt-Mir-103-P2  Spu-Mir-103  Sto-Mir-103-P2  Tgu-Mir-103-P2  Tni-Mir-103-P2a  Xbo-Mir-103  Xtr-Mir-103-P2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Deuterostomia
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
GeneScaffold_2355: 136951-137010 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGCAUUAAACCACUCCGUCCCCGUGUCCUCAGCCUCUUUACGGUGCUGCCUUGUGGCGUCUUGAUCAAGCAGCAUUGUACAGGGCUAUGAGGACACUNNNNNNNNNNNNNNNNNNNNNNN
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Structure
        10        20          30          40        50         
CGCAUUAAACCACUCCGUCCCC--        --|   U  U           C   UGGCG 
                        GUGUCCUC  AGCC CU UACGGUGCUGC UUG     U
                        CACAGGAG  UCGG GA AUGUUACGACG AAC     C
NNNNNNNNNNNNNNNNNNNNNNNU        UA^   -  C           -   UAGUU 
.       110       100        90         80        70         60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Star sequence

Gmo-Mir-103-P2a_5p*

mirBase accessionMIMAT0044189
Sequence
0- AGCCUCUUUACGGUGCUGCCUUG -23
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Mature sequence

Gmo-Mir-103-P2a_3p

mirBase accessionMIMAT0044050
Sequence
37- AGCAGCAUUGUACAGGGCUAUGA -60
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