MirGeneDB 2.1

MirGeneDB ID

Cmi-Mir-103-P2

Family name MIR-103 (all species)
Seed GCAGCAU
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-103-P1  Cmi-Mir-103-P4 
Orthologues Aca-Mir-103-P2  Ami-Mir-103-P2  Bta-Mir-103-P2  Cfa-Mir-103-P2  Cli-Mir-103-P2  Cpi-Mir-103-P2  Cpo-Mir-103-P2  Dno-Mir-103-P2  Dre-Mir-103-P2a  Dre-Mir-103-P2b  Ete-Mir-103-P2  Gga-Mir-103-P2  Gja-Mir-103-P2  Gmo-Mir-103-P2a  Gmo-Mir-103-P2b  Hsa-Mir-103-P2  Lch-Mir-103-P2  Loc-Mir-103-P2  Mal-Mir-103-P2a  Mal-Mir-103-P2b  Mdo-Mir-103-P2  Mml-Mir-103-P2  Mmu-Mir-103-P2  Mun-Mir-103-P2  Oan-Mir-103-P2  Ocu-Mir-103-P2  Pbv-Mir-103-P2  Pfl-Mir-103  Pma-Mir-103-o2  Pmi-Mir-103  Rno-Mir-103-P2  Sha-Mir-103-P2  Sko-Mir-103  Spt-Mir-103-P2  Spu-Mir-103  Sto-Mir-103-P2  Tgu-Mir-103-P2  Tni-Mir-103-P2a  Tni-Mir-103-P2b  Xbo-Mir-103  Xla-Mir-103-P2c  Xla-Mir-103-P2d  Xtr-Mir-103-P2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Deuterostomia
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)
KI635913.1: 2726514-2726573 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAGGAAAAAAAAUCAAUGCUCUGUGUUUUCAGCUUCUUUACAGUGCUGACUUGUAGCAUCCGGAUCAAGCAGCAUUGUACAGGGCUAUGAAAGUACUGAGCCCUAUCCUGCUGUUGGUUU
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Structure
        10          20        30          40        50         
AAGGAAAAAAAAUCAAU--    U        --|   U  U          A    UAGCA 
                   GCUC GUGUUUUC  AGCU CU UACAGUGCUG CUUG     U
                   CGAG CAUGAAAG  UCGG GA AUGUUACGAC GAAC     C
UUUGGUUGUCGUCCUAUCC    U        UA^   -  C          -    UAGGC 
.       110       100        90         80        70         60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Bl Br Ey Gi Gl He In Ki Li Mu Ov Pa Sk Sp Te Ut
Star sequence

Cmi-Mir-103-P2_5p*

mirBase accessionNone
Sequence
0- AGCUUCUUUACAGUGCUGACUUG -23
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Mature sequence

Cmi-Mir-103-P2_3p

mirBase accessionNone
Sequence
37- AGCAGCAUUGUACAGGGCUAUGA -60
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