Mir-103-P2

MirGeneDB ID

Cmi-Mir-103-P2

Family name

MIR-103 (all species)

Species

Australian ghostshark (Callorhinchus milii)

MiRBase ID

Paralogues

Cmi-Mir-103-P1 Cmi-Mir-103-P4

Orthologues

Aca-Mir-103-P2 Ami-Mir-103-P2 Bta-Mir-103-P2 Cfa-Mir-103-P2 Cja-Mir-103-P2 Cli-Mir-103-P2 Cpi-Mir-103-P2 Cpo-Mir-103-P2 Dno-Mir-103-P2 Dre-Mir-103-P2a Dre-Mir-103-P2b Eca-Mir-103-P2 Ete-Mir-103-P2 Gga-Mir-103-P2 Gja-Mir-103-P2 Gmo-Mir-103-P2a Gmo-Mir-103-P2b Hmi-Mir-103 Hsa-Mir-103-P2 Laf-Mir-103-P2 Lch-Mir-103-P2 Loc-Mir-103-P2 Mal-Mir-103-P2a Mal-Mir-103-P2b Mdo-Mir-103-P2 Mml-Mir-103-P2 Mmr-Mir-103-P2 Mmu-Mir-103-P2 Mun-Mir-103-P2 Neu-Mir-103-P2 Oan-Mir-103-P2 Ocu-Mir-103-P2 Pab-Mir-103-P2 Pbv-Mir-103-P2 Pfl-Mir-103 Pma-Mir-103-o2 Pmi-Mir-103 Rno-Mir-103-P2 Sha-Mir-103-P2 Sko-Mir-103 Spt-Mir-103-P2 Spu-Mir-103 Sro-Mir-103 Sto-Mir-103-P2 Tgu-Mir-103-P2 Tni-Mir-103-P2a Tni-Mir-103-P2b Xbo-Mir-103 Xla-Mir-103-P2c Xla-Mir-103-P2d Xtr-Mir-103-P2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)

KI635913.1: 2726514-2726573 [+] UCSC Ensembl

Seed

GCAGCAU

Precursor
(pre-Mir +30nt flank)

AAGGAAAAAAAAUCAAUGCUCUGUGUUUUCAGCUUCUUUACAGUGCUGACUUGUAGCAUCCGGAUCAAGCAGCAUUGUACAGGGCUAUGAAAGUACUGAGCCCUAUCCUGCUGUUGGUUU

Get precursor sequence

Structure

        10          20        30          40        50         
AAGGAAAAAAAAUCAAU--    U        --|   U  U          A    UAGCA 
                   GCUC GUGUUUUC  AGCU CU UACAGUGCUG CUUG     U
                   CGAG CAUGAAAG  UCGG GA AUGUUACGAC GAAC     C
UUUGGUUGUCGUCCUAUCC    U        UA^   -  C          -    UAGGC 
.       110       100        90         80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Bl	Br	Ey	Gi	He	In	Ki	Li	Mu	Ov	Pa	Re	Sk	Sp	Te	Ut

Star sequence

Cmi-Mir-103-P2_5p*

mirBase accession

None

Sequence

0- AGCUUCUUUACAGUGCUGACUUG -23

Get sequence

Mature sequence

Cmi-Mir-103-P2_3p

mirBase accession

None

Sequence

37- AGCAGCAUUGUACAGGGCUAUGA -60

Get sequence