MirGeneDB 2.1

MirGeneDB ID

Tni-Mir-103-P2b

Family name MIR-103 (all species)
Seed GCAGCAU
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-103
Paralogues Tni-Mir-103-P1a  Tni-Mir-103-P2a 
Orthologues Aca-Mir-103-P2  Ami-Mir-103-P2  Bta-Mir-103-P2  Cfa-Mir-103-P2  Cli-Mir-103-P2  Cmi-Mir-103-P2  Cpi-Mir-103-P2  Cpo-Mir-103-P2  Dno-Mir-103-P2  Dre-Mir-103-P2b  Ete-Mir-103-P2  Gga-Mir-103-P2  Gja-Mir-103-P2  Gmo-Mir-103-P2b  Hsa-Mir-103-P2  Lch-Mir-103-P2  Loc-Mir-103-P2  Mal-Mir-103-P2b  Mdo-Mir-103-P2  Mml-Mir-103-P2  Mmu-Mir-103-P2  Mun-Mir-103-P2  Oan-Mir-103-P2  Ocu-Mir-103-P2  Pbv-Mir-103-P2  Pfl-Mir-103  Pma-Mir-103-o2  Pmi-Mir-103  Rno-Mir-103-P2  Sha-Mir-103-P2  Sko-Mir-103  Spt-Mir-103-P2  Spu-Mir-103  Sto-Mir-103-P2  Tgu-Mir-103-P2  Xbo-Mir-103  Xtr-Mir-103-P2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Deuterostomia
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)
1: 5372738-5372798 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUCGCCAUCGCCACCUUGCUCUACGCUUUUAGCCUCUUUACAGUGCUGCCUUGCUCUACUCAUGUUCAAGCAGCAUUGUACAGGGCUAUGACAGCGUAGAGAGCCGAGCAGCGCUUCUCUG
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Structure
        10          20          30        40        50          
UUCGCCAUCGCCACCUUG--         UU--|    U  U           C   CUCUAC 
                    CUCUACGCU    UAGCC CU UACAGUGCUGC UUG      \
                    GAGAUGCGA    AUCGG GA AUGUUACGACG AAC      U
GUCUCUUCGCGACGAGCCGA         CAGU^    -  C           -   UUGUAC 
 .       110       100        90         80        70
Deep sequencing
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CommentThere is a second Drosha site -1 on the 5p arm.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Sp Sp Sp To
Star sequence

Tni-Mir-103-P2b_5p*

mirBase accessionNone
Sequence
0- AGCCUCUUUACAGUGCUGCCUUG -23
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Mature sequence

Tni-Mir-103-P2b_3p

mirBase accessionMIMAT0003042
Sequence
38- AGCAGCAUUGUACAGGGCUAUGA -61
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