MirGeneDB 2.1

MirGeneDB ID

Xla-Mir-103-P4

Family name MIR-103 (all species)
Seed GCAGCAU
Species African clawed frog (Xenopus laevis)
MiRBase ID xla-mir-103a
Paralogues Xla-Mir-103-P1c  Xla-Mir-103-P1d  Xla-Mir-103-P2c  Xla-Mir-103-P2d 
Orthologues Aca-Mir-103-P4  Ami-Mir-103-P4  Bta-Mir-103-P4  Cfa-Mir-103-P4  Cli-Mir-103-P4  Cmi-Mir-103-P4  Cpi-Mir-103-P4  Cpo-Mir-103-P4  Dno-Mir-103-P4  Ete-Mir-103-P4  Gga-Mir-103-P4  Gja-Mir-103-P4  Hsa-Mir-103-P4  Lch-Mir-103-P4  Loc-Mir-103-P4  Mdo-Mir-103-P4  Mml-Mir-103-P4  Mmu-Mir-103-P4  Mun-Mir-103-P4  Oan-Mir-103-P4  Ocu-Mir-103-P4  Pbv-Mir-103-P4  Pfl-Mir-103  Pmi-Mir-103  Rno-Mir-103-P4  Sha-Mir-103-P4  Sko-Mir-103  Spt-Mir-103-P4  Spu-Mir-103  Sto-Mir-103-P4  Tgu-Mir-103-P4  Xbo-Mir-103  Xtr-Mir-103-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Deuterostomia
Genome context
(GCF_001663975.1_XLA_v2)
NC_030729.1: 111898598-111898657 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAGAAGUGCAUGAAUAUUCUCAUUUCGUUCGGCUUCUUUACAGUGCUGCCUUGUUGCAUAUGGAUCAAGCAGCAUUGUACAGGGCUAUGAAGGAUCUGAGGAAAAACAUCACCUGAAGAG
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Structure
        10          20        30          40        50         
AAGAAGUGCAUGAAUAU--     UU  G   --|   U  U           C   UUGCA 
                   UCUCA  UC UUC  GGCU CU UACAGUGCUGC UUG     U
                   GGAGU  AG AAG  UCGG GA AUGUUACGACG AAC     A
GAGAAGUCCACUACAAAAA     CU  G   UA^   -  C           -   UAGGU 
.       110       100        90         80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Eg He Re St St St St
Star sequence

Xla-Mir-103-P4_5p*

mirBase accessionMIMAT0046414
Sequence
0- GGCUUCUUUACAGUGCUGCCUUG -23
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Mature sequence

Xla-Mir-103-P4_3p

mirBase accessionMIMAT0046415
Sequence
37- AGCAGCAUUGUACAGGGCUAUGA -60
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