| MirGeneDB ID | Bla-Mir-103-P5 |
|---|
| Family name |
MIR-103 (all species) |
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| Seed |
GCCAUUG |
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| Species |
European lancelet (Branchiostoma lanceolatum) |
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| MiRBase ID |
|
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| Paralogues |
Bla-Mir-103-P6
Bla-Mir-103-P7
Bla-Mir-103-P8
|
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| Orthologues |
Bfl-Mir-103-P5
Pfl-Mir-103
Pmi-Mir-103
Sko-Mir-103
Spu-Mir-103
Xbo-Mir-103
|
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| Node of Origin (locus) |
Branchiostoma
|
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| Node of Origin (family) |
Deuterostomia
|
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Genome context
(BraLan2) |
Sc0000420: 183063-183129 [-]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
GUGUGUGUGUGGUGGAUGGCUUUGCUCCUGAGCCAUUGCAUUUGUCUGCCUUGUCUGUGCAUUGAGAUGUCCAAAGCAGCAUAGUGCAAUGGUGUCAGGGUCAGGGCUGAAGUCUACGAGUUCAAAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GUGUGUGUGUGGUGGAU-- CU - -| U C GUCUGUGCA
GGCUUUG CCUGA GCCAUUGCAUU UG CUGC UU U
UCGGGAC GGACU UGGUAACGUGA AC GACG AA U
CAAACUUGAGCAUCUGAAG UG G U^ - A CCUGUAGAG
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Bla-Mir-103-P5_5p |
| mirBase accession | None |
|---|
| Sequence |
0- AGCCAUUGCAUUUGUCUGCCUU -22
Get sequence
|
|---|
| Co-mature sequence |
Bla-Mir-103-P5_3p |
| mirBase accession | None |
|---|
| Sequence |
44- AGCAGCAUAGUGCAAUGGUGUCA -67
Get sequence
|
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