| MirGeneDB ID | Bla-Mir-103-P7 |
|---|
| Family name |
MIR-103 (all species) |
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| Seed |
AGCAGCA |
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| Species |
European lancelet (Branchiostoma lanceolatum) |
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| MiRBase ID |
|
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| Paralogues |
Bla-Mir-103-P5
Bla-Mir-103-P6
Bla-Mir-103-P8
|
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| Orthologues |
Bfl-Mir-103-P7
Pfl-Mir-103
Pmi-Mir-103
Sko-Mir-103
Spu-Mir-103
Xbo-Mir-103
|
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| Node of Origin (locus) |
Branchiostoma
|
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| Node of Origin (family) |
Deuterostomia
|
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Genome context
(BraLan2) |
Sc0000082: 845654-845713 [-]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
AGGAGGAAGCGGCUGGUGCCGGCGCCCCUGACUGCUGCUUCCUGCUGCCUUGGGGAAUAUCAACCACCAAGCAGCAGUGUGCAGUGGUGAGGGUCGUACGGCUCAGGCUACAAACACAAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AGGAGGAAGCGGCUGGU- -| C G UG UUC C GGAAUA
GCCG GCG CCCU AC CUGC CUGCUGC UUGG \
CGGC UGC GGGA UG GACG GACGACG AACC U
GAACACAAACAUCGGACU A^ U G GU UGU - ACCAAC
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Bla-Mir-103-P7_5p* |
| mirBase accession | None |
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| Sequence |
0- ACUGCUGCUUCCUGCUGCCUUGG -23
Get sequence
|
|---|
| Mature sequence |
Bla-Mir-103-P7_3p |
| mirBase accession | None |
|---|
| Sequence |
38- AAGCAGCAGUGUGCAGUGGUGA -60
Get sequence
|
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