MirGeneDB

MirGeneDB ID

Rno-Mir-103-P1

Family name MIR-103 (all species)
Seed GCAGCAU
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-103-1
Paralogues Rno-Mir-103-P2  Rno-Mir-103-P3 
Orthologues Aca-Mir-103-P1  Ami-Mir-103-P1  Bfl-Mir-103  Bta-Mir-103-P1  Cfa-Mir-103-P1  Cli-Mir-103-P1  Cpi-Mir-103-P1  Cpo-Mir-103-P1  Dno-Mir-103-P1  Ete-Mir-103-P1  Gga-Mir-103-P1  Hsa-Mir-103-P1  Mdo-Mir-103-P1  Mml-Mir-103-P1  Mmu-Mir-103-P1  Oan-Mir-103-P1  Ocu-Mir-103-P1  Pfl-Mir-103  Pmi-Mir-103  Sha-Mir-103-P1  Sko-Mir-103  Spu-Mir-103  Sto-Mir-103-P1  Tgu-Mir-103-P1  Xtr-Mir-103-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Deuterostomia
Genome context
(rn6)
chr10: 20606729-20606788 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAGAUGCGUGGAAGUUUUCUUACUGCCCUCGGCUUCUUUACAGUGCUGCCUUGUUGCAUAUGGAUCAAGCAGCAUUGUACAGGGCUAUGAAGGCAUUGAGACUUGUUCUUCAUGCUGUUU
Get precursor sequence
Structure
        10          20        30          40        50         
GAGAUGCGUGGAAGUUU--     C    C  --|   U  U           C   UUGCA 
                   UCUUA UGCC UC  GGCU CU UACAGUGCUGC UUG     U
                   AGAGU ACGG AG  UCGG GA AUGUUACGACG AAC     A
UUUGUCGUACUUCUUGUUC     U    A  UA^   -  C           -   UAGGU 
.       110       100        90         80        70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Star sequence

Rno-Mir-103-P1_5p*

MirBase accessionMIMAT0017114
Sequence
0- GGCUUCUUUACAGUGCUGCCUUG -23
Get sequence
Validated targets TargetScanVert: rno-miR-103-1-5p
miRDB: MIMAT0017114
Mature sequence

Rno-Mir-103-P1_3p

MirBase accessionMIMAT0000824
Sequence
37- AGCAGCAUUGUACAGGGCUAUGA -60
Get sequence
Validated targets microrna.org: MIMAT0000824
TargetScanVert: rno-miR-103-3p
miRDB: MIMAT0000824