MirGeneDB 3.0
MirGeneDB ID

Bfl-Mir-10-P1

Family name MIR-10 (all species)
Species Florida lancelet (Branchiostoma floridae)
MiRBase ID bfl-mir-10a
Paralogues Bfl-Mir-10-P1-v1  Bfl-Mir-10-P2-v1  Bfl-Mir-10-P3  Bfl-Mir-10-P9  Bfl-Mir-10-P10 
Orthologues Aae-Mir-10-P1-v1  Aca-Mir-10-P1b-v1  Aca-Mir-10-P1c-v1  Aca-Mir-10-P1d-v1  Adi-Mir-10  Aga-Mir-10-P1-v1  Agr-Mir-10-P1  Ami-Mir-10-P1b-v1  Ami-Mir-10-P1c-v1  Ami-Mir-10-P1d-v1  Asp-Mir-10  Asu-Mir-10-P1  Bge-Mir-10-P1-v1  Bla-Mir-10-P1-v1  Bta-Mir-10-P1b-v1  Bta-Mir-10-P1c-v1  Cbr-Mir-10-P1  Cel-Mir-10-P1  Cfa-Mir-10-P1b-v1  Cfa-Mir-10-P1c-v1  Cja-Mir-10-P1b-v1  Cja-Mir-10-P1c-v1  Cli-Mir-10-P1b-v1  Cli-Mir-10-P1c-v1  Cli-Mir-10-P1d-v1  Cmi-Mir-10-P1b-v1  Cmi-Mir-10-P1c-v1  Cmi-Mir-10-P1d-v1  Cpi-Mir-10-P1b-v1  Cpi-Mir-10-P1c-v1  Cpi-Mir-10-P1d-v1  Cpo-Mir-10-P1b-v1  Cpo-Mir-10-P1c-v1  Csc-Mir-10-P1q1-v1  Csc-Mir-10-P1q2-v1  Csc-Mir-10-P1q3-v1  Csc-Mir-10-P1r  Cte-Mir-10-P1  Dan-Mir-10-P1  Dgr-Mir-10-P1  Dlo-Mir-10-P1-v1  Dma-Mir-10-P1-v1  Dme-Mir-10-P1  Dmo-Mir-10-P1  Dno-Mir-10-P1b-v1  Dno-Mir-10-P1c-v1  Dpu-Mir-10-P1-v1  Dre-Mir-10-P1b1-v1  Dre-Mir-10-P1b2-v1  Dre-Mir-10-P1c1-v1  Dre-Mir-10-P1c2-v1  Dre-Mir-10-P1d1-v1  Dsi-Mir-10-P1  Dya-Mir-10-P1  Eba-Mir-10-P1  Ebu-Mir-10-P1e  Ebu-Mir-10-P1f  Eca-Mir-10-P1b-v1  Eca-Mir-10-P1c-v1  Efe-Mir-10-P1  Egr-Mir-10-P1  Ete-Mir-10-P1b-v1  Ete-Mir-10-P1c-v1  Gga-Mir-10-P1b-v1  Gga-Mir-10-P1c-v1  Gga-Mir-10-P1d-v1  Gja-Mir-10-P1b-v1  Gja-Mir-10-P1c-v1  Gja-Mir-10-P1d-v1  Gmo-Mir-10-P1b1-v1  Gmo-Mir-10-P1b2-v1  Gmo-Mir-10-P1c1-v1  Gmo-Mir-10-P1c2-v1  Gmo-Mir-10-P1d1-v1  Gpa-Mir-10-P1  Gsa-Mir-10-P1o6  Gsa-Mir-10-P1o7  Gsp-Mir-10-P1  Hme-Mir-10-P1-v1  Hmi-Mir-10-P1a  Hmi-Mir-10-P1b  Hru-Mir-10-P1  Hsa-Mir-10-P1b-v1  Hsa-Mir-10-P1c-v1  Isc-Mir-10-P1-v1  Laf-Mir-10-P1b  Laf-Mir-10-P1c-v1  Lan-Mir-10-P1u  Lan-Mir-10-P1v  Lch-Mir-10-P1b  Lch-Mir-10-P1c  Lch-Mir-10-P1d  Lgi-Mir-10-P1  Lhy-Mir-10-P1  Llo-Mir-10-P1  Loc-Mir-10-P1b-v1  Loc-Mir-10-P1c-v1  Loc-Mir-10-P1d-v1  Lpo-Mir-10-P1k-v1  Lpo-Mir-10-P1l-v1  Lpo-Mir-10-P1m-v1  Lpo-Mir-10-P1n-v1  Lpo-Mir-10-P1o-v1  Lpo-Mir-10-P1p-v1  Mal-Mir-10-P1b1-v1  Mal-Mir-10-P1b2  Mal-Mir-10-P1c1-v1  Mal-Mir-10-P1c2a-v1  Mal-Mir-10-P1c2b-v1  Mal-Mir-10-P1d1-v1  Mdo-Mir-10-P1b-v1  Mdo-Mir-10-P1c-v1  Mgi-Mir-10-P1  Mml-Mir-10-P1b-v1  Mml-Mir-10-P1c-v1  Mmr-Mir-10-P1b-v1  Mmr-Mir-10-P1c-v1  Mmu-Mir-10-P1b-v1  Mmu-Mir-10-P1c-v1  Mom-Mir-10-P1  Mun-Mir-10-P1b-v1  Mun-Mir-10-P1c-v1  Mun-Mir-10-P1d-v1  Neu-Mir-10-P1b-v1  Neu-Mir-10-P1c-v1  Npo-Mir-10-P1  Nve-Mir-10  Oan-Mir-10-P1b-v1  Oan-Mir-10-P1c-v1  Ocu-Mir-10-P1b-v1  Ocu-Mir-10-P1c-v1  Ofu-Mir-10-P1  Pab-Mir-10-P1b-v1  Pab-Mir-10-P1c-v1  Pau-Mir-10-P1  Pbv-Mir-10-P1b-v1  Pbv-Mir-10-P1c-v1  Pbv-Mir-10-P1d-v1  Pca-Mir-10-P1  Pcr-Mir-10-P1o4-v1  Pcr-Mir-10-P1o5  Pdu-Mir-10-P1  Pfl-Mir-10-P1  Pma-Mir-10-P1o1  Pma-Mir-10-P1o2  Pmi-Mir-10-P1  Pve-Mir-10-P1  Rno-Mir-10-P1b-v1  Rno-Mir-10-P1c-v1  Rph-Mir-10-P1  Sha-Mir-10-P1b-v1  Sha-Mir-10-P1c-v1  Sko-Mir-10-P1  Sma-Mir-10-P1  Sme-Mir-10-P1s  Sme-Mir-10-P1t  Snu-Mir-10-P1  Spt-Mir-10-P1b  Spt-Mir-10-P1c  Spu-Mir-10-P1  Sro-Mir-10-P1w  Sro-Mir-10-P1x  Sto-Mir-10-P1b-v1  Sto-Mir-10-P1c-v1  Tca-Mir-10-P1-v1  Tgu-Mir-10-P1b-v1  Tgu-Mir-10-P1c-v1  Tni-Mir-10-P1b1-v1  Tni-Mir-10-P1b2  Tni-Mir-10-P1c1-v1  Tni-Mir-10-P1c2-v1  Tni-Mir-10-P1d1-v1  Tur-Mir-10-P1y  Tur-Mir-10-P1z-v1  War-Mir-10-P1  Xbo-Mir-10-P1  Xla-Mir-10-P1b3-v1  Xla-Mir-10-P1b4-v1  Xla-Mir-10-P1c3-v1  Xla-Mir-10-P1c4-v1  Xla-Mir-10-P1d3-v1  Xla-Mir-10-P1d4-v1  Xtr-Mir-10-P1b-v1  Xtr-Mir-10-P1c-v1  Xtr-Mir-10-P1d-v1 
Node of Origin (locus) Bilateria
Node of Origin (family) Eumetazoa
Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)		 NC_049994.1: 10572281-10572341 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-10-P1-v2)		 Mir-10-P1-v1 NC_049994.1: 10572280-10572342 [+] UCSC
Mir-10-P1-v2 NC_049994.1: 10572281-10572341 [+] UCSC
Variant

Bfl-Mir-10-P1-v2
Seed ACCCUGU
Precursor
(pre-Mir +30nt flank)		 
GAAAAUCACGCUAUGUUCAUAGUCUAUAUGUACCCUGUAGAUCCGAAUUUGUGUGAGGUACCCAAGUCACAAAUUCGUUUCUGCAGGUAUAAUGUAGCCUGUGACCUGACCAGCGAUUGGG
Get precursor sequence
Structure
        10         20         30        40        50        60
GAAAAUCACGCUAUGUU-     U     -|     C      UC          UGAGGU 
                  CAUAG CUAUA UGUACC UGUAGA  CGAAUUUGUG      A
                  GUGUC GAUGU AUAUGG ACGUCU  GCUUAAACAC      C
GGGUUAGCGACCAGUCCA     C     A^     -      UU          UGAACC 
 .       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
To
Mature sequence

Bfl-Mir-10-P1-v2_5p
mirBase accessionMIMAT0009466
Sequence 
0- UACCCUGUAGAUCCGAAUUUGUG -23
Get sequence
Star sequence

Bfl-Mir-10-P1-v2_3p*
mirBase accessionMIMAT0009467
Sequence 
39- CAAAUUCGUUUCUGCAGGUAUA -61
Get sequence
Variant

Bfl-Mir-10-P1-v1
Seed UACCCUG
Precursor
(pre-Mir +30nt flank)		 
AGAAAAUCACGCUAUGUUCAUAGUCUAUAUGUACCCUGUAGAUCCGAAUUUGUGUGAGGUACCCAAGUCACAAAUUCGUUUCUGCAGGUAUAAUGUAGCCUGUGACCUGACCAGCGAUUGGGA
Get precursor sequence
Structure
        10         20         30        40        50        60 
AGAAAAUCACGCUAUGU-      U     -|     C      UC         GUGAGGU 
                  UCAUAG CUAUA UGUACC UGUAGA  CGAAUUUGU       A
                  AGUGUC GAUGU AUAUGG ACGUCU  GCUUAAACA       C
AGGGUUAGCGACCAGUCC      C     A^     -      UU         CUGAACC 
 120       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUGUG in loop
Tissue expression
- +
To
Mature sequence

Bfl-Mir-10-P1-v1_5p
mirBase accessionMIMAT0009466
Sequence 
0- GUACCCUGUAGAUCCGAAUUUGU -23
Get sequence
Star sequence

Bfl-Mir-10-P1-v1_3p*
mirBase accessionMIMAT0009467
Sequence 
41- AAAUUCGUUUCUGCAGGUAUAA -63
Get sequence