MirGeneDB 3.0
125 Heliconius melpomene microRNA genes
Sort by genome coordinates Motifs Tissue expression
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MirGeneDB ID ▼ MiRBase ID Family Seed 5p accession 3p accession Chromosome Start End Strand Node of origin (locus) Node of origin (family) Iso­miR 3' NTU  UG  UGUG CNNC Ad Fe Fe Fe Fe Ma Ma
Hme-Novel-7 None HME-NOVEL-7 UGCGUUG None None HE672065 650060 650136 - H. melpomene H. melpomene No 1
Hme-Novel-6 None HME-NOVEL-6 AGUCGAG None None HE672042 72357 72421 + H. melpomene H. melpomene No
Hme-Novel-5-P5 None HME-NOVEL-5 UUGCCUU None None HE671980 159936 159991 - H. melpomene H. melpomene No 1 1
Hme-Novel-5-P4 None HME-NOVEL-5 UUGCCUU None None HE671980 160228 160283 - H. melpomene H. melpomene No 1 1
Hme-Novel-5-P3b None HME-NOVEL-5 UUGCCUU None None HE671980 160418 160473 - H. melpomene H. melpomene No 1 1
Hme-Novel-5-P3a None HME-NOVEL-5 UUGCCUU None None HE671980 160606 160661 - H. melpomene H. melpomene No 1 1
Hme-Novel-5-P2 None HME-NOVEL-5 UUGCCUU None None HE671980 160796 160851 - H. melpomene H. melpomene No 1 1
Hme-Novel-5-P1 None HME-NOVEL-5 UUGCCUU None None HE671980 160985 161040 - H. melpomene H. melpomene No 1
Hme-Novel-4 None HME-NOVEL-4 UGAUGAU None None HE671687 151159 151219 + H. melpomene H. melpomene No 1
Hme-Novel-3 None HME-NOVEL-3 GCGGAGA None None HE671335 621504 621559 - H. melpomene H. melpomene No 1
Hme-Novel-2 None HME-NOVEL-2 CCAAUAA None None HE671335 621364 621419 + H. melpomene H. melpomene No
Hme-Novel-1 None HME-NOVEL-1 UUCGCCU None None HE672018 201434 201493 + H. melpomene H. melpomene No 1
Hme-Mir-10485 None MIR-10485 CAGUCUA None None HE670498 254375 254430 + H. melpomene H. melpomene No 1
Hme-Mir-6307 hme-mir-6307 MIR-6307 AAGCUCG None MIMAT0025014 HE670993 20663 20723 - H. melpomene H. melpomene No 1
Hme-Mir-6305 hme-mir-6305 MIR-6305 UAUGCUA MIMAT0025010 MIMAT0025011 HE670942 235843 235906 - H. melpomene H. melpomene No 1
Hme-Mir-6304 hme-mir-6304 MIR-6304 UUCCAGU None MIMAT0025009 HE670412 210116 210172 + H. melpomene H. melpomene No 1 1
Hme-Mir-6302-P2 hme-mir-6302-1 MIR-6302 AAACUCA MIMAT0025006 MIMAT0025007 HE671389 229935 229991 - H. melpomene H. melpomene No 1
Hme-Mir-6302-P1 hme-mir-6302-2 MIR-6302 AAACUCA MIMAT0026464 MIMAT0025007 HE671389 230471 230526 - H. melpomene H. melpomene No 1
Hme-Mir-6301-P2 hme-mir-6301-1 MIR-6301 CAGUUCA MIMAT0025004 MIMAT0025005 HE671389 229326 229379 - H. melpomene H. melpomene No 1 1
Hme-Mir-6301-P1 hme-mir-6301-2 MIR-6301 CAGUUCA MIMAT0026470 MIMAT0025005 HE671389 229572 229629 - H. melpomene H. melpomene No 1 1
Hme-Mir-3338 hme-mir-3338 MIR-3338 UGUACUU None MIMAT0024982 HE671311 86526 86586 - H. melpomene H. melpomene No 1
Hme-Mir-3327 hme-mir-3327 MIR-3327 UAUGUAA MIMAT0024981 None HE671311 86391 86452 - H. melpomene H. melpomene No 1
Hme-Mir-2796 hme-mir-2796 MIR-2796 UAGGCCG None MIMAT0024962 HE671853 30010 30066 + Neoptera Neoptera Unknown 1
Hme-Mir-2786 None MIR-2786 UCUCUCG None None HE671033 61257 61318 + H. melpomene H. melpomene Unknown 1 1
Hme-Mir-2767 hme-mir-2767 MIR-2767 AAGUAAA MIMAT0024957 None HE671115 285746 285800 + H. melpomene H. melpomene No 1
Hme-Mir-2766-P2 None MIR-2766 CAGUCUU None None HE670430 103144 103202 - H. melpomene H. melpomene No 1
Hme-Mir-2766-P1 None MIR-2766 CAGUCUU None None HE670389 111848 111906 + H. melpomene H. melpomene No 1
Hme-Mir-2765 hme-mir-2765 MIR-2765 GGUAACU MIMAT0024956 None HE669320 70094 70148 + Neoptera Neoptera No 1
Hme-Mir-2763 V hme-mir-2763 MIR-2763 AUUAUGC None MIMAT0024955 HE672065 139460 139521 - H. melpomene H. melpomene 2 No 1 1
Hme-Mir-2756 hme-mir-2756 MIR-2756 CCCUGUA MIMAT0024953 None HE672079 296638 296695 + H. melpomene H. melpomene No 1
Hme-Mir-2755 hme-mir-2755 MIR-2755 ACCCUGU None MIMAT0024952 HE671518 150664 150723 - H. melpomene H. melpomene No
Hme-Mir-2001 None MIR-2001 UUGUGAC None None HE669201 27587 27644 - Bilateria Bilateria No
Hme-Mir-1175 hme-mir-1175 MIR-1175 AGUGGAG MIMAT0024935 None HE669540 33194 33255 + Protostomia Protostomia No 1
Hme-Mir-1000 hme-mir-1000 MIR-1000 UAUUGUC MIMAT0024933 None HE669583 87273 87327 + Neoptera Neoptera No 1
Hme-Mir-989-P2 None MIR-989 GUGAUGU None None FARY01123984.1 1092 1151 - H. melpomene Endopterygota No 1
Hme-Mir-989-P1 None MIR-989 GUGAUGU None None FARY01123984.1 1726 1785 - H. melpomene Endopterygota No 1
Hme-Mir-988 None MIR-988 CCCUUGU None None HE672081 475628 475688 + Panorpida Panorpida No 1 1
Hme-Mir-971 hme-mir-971 MIR-971 ACUCUAA None MIMAT0024998 HE670834 76896 76955 + Neoptera Neoptera No 1
Hme-Mir-970 hme-mir-970 MIR-970 CAUAAGA None MIMAT0024997 HE669340 23237 23299 + Aparaglossata Aparaglossata No 1 1
Hme-Mir-965 hme-mir-965 MIR-965 GGGAGAA None MIMAT0024996 HE670498 371732 371791 - Pancrustacea Pancrustacea No 1
Hme-Mir-932 hme-mir-932 MIR-932 CAAUUCC MIMAT0024995 None HE670498 24471 24528 + Neoptera Neoptera No 1
Hme-Mir-929 hme-mir-929 MIR-929 AAUUGAC MIMAT0024992 None HE672076 29049 29106 + Neoptera Neoptera No 1
Hme-Mir-927-P2 None MIR-927 UUAGAAU None None HE667975 146591 146653 - Neoptera Neoptera No 1
Hme-Mir-927-P1 hme-mir-927 MIR-927 UUAGAAU MIMAT0024990 None HE669889 61418 61478 + Neoptera Neoptera No 1
Hme-Mir-750 None MIR-750 CAGAUCU None None HE669540 33040 33101 + Protostomia Protostomia No 1
Hme-Mir-375 None MIR-375 UUGUUCG None None HE671996 113010 113065 - Nephrozoa Nephrozoa No 1
Hme-Mir-317 None MIR-317 GAACACA None None HE667979 27841 27903 - Protostomia Protostomia No 1
Hme-Mir-316 hme-mir-316 MIR-316 GUCUUUU MIMAT0024978 None HE671816 56648 56709 - Pancrustacea Pancrustacea No
Hme-Mir-306 hme-mir-306 MIR-306 CAGGUAC MIMAT0024975 None HE669612 9837 9892 - Neoptera Neoptera No
Hme-Mir-305 hme-mir-305 MIR-305 UUGUACU MIMAT0024974 None HE669248 31865 31924 + Cryptovermes Cryptovermes No 1
Hme-Mir-282 hme-mir-282 MIR-282 AGCCUCU MIMAT0024968 None HE670913 81384 81446 + Pancrustacea Pancrustacea No 1
Hme-Mir-281 hme-mir-281 MIR-281 AGAGAGC None MIMAT0024967 HE671164 1105686 1105744 + Nephrozoa Nephrozoa No 1
Hme-Mir-279-P3 hme-mir-279d MIR-279 GACUAGA None MIMAT0024965 HE670979 4652 4714 - Pancrustacea Protostomia No
Hme-Mir-279-P2 hme-mir-279b MIR-279 GACUAGA None MIMAT0024964 HE670979 5122 5178 - Pancrustacea Protostomia No 1 1
Hme-Mir-279-o2 hme-mir-279c MIR-279 GACUAGA None MIMAT0024966 HE671887 111974 112030 + H. melpomene Protostomia No 1 1
Hme-Mir-279-o1 hme-mir-279a MIR-279 GACUAGA None MIMAT0024961 HE668381 19337 19392 - H. melpomene Protostomia No 1
Hme-Mir-278 hme-mir-278 MIR-278 CGGUGGG None MIMAT0024960 HE671244 255776 255833 + Bilateria Bilateria No
Hme-Mir-277 hme-mir-277 MIR-277 AAAUGCA None MIMAT0024959 HE667979 12468 12551 - Protostomia Protostomia No 1
Hme-Mir-276 hme-mir-276 MIR-276 AGGAACU MIMAT0024954 None HE671577 38337 38393 + Arthropoda Arthropoda No 1 1
Hme-Mir-275 None MIR-275 CAGGUAC None None HE669248 31749 31804 + Arthropoda Arthropoda No 1
Hme-Mir-252-P2 hme-mir-252 MIR-252 UAAGUAC MIMAT0024948 None HE669201 11729 11788 - Bilateria Bilateria Unknown 1
Hme-Mir-252-P1 hme-mir-2797 MIR-252 UAAGUAG MIMAT0024963 None HE669201 24262 24317 - Bilateria Bilateria Unknown 1
Hme-Mir-216-P2 None MIR-216 AAUCUCA None None HE669534 42003 42127 + Nephrozoa Nephrozoa No
Hme-Mir-216-P1 hme-mir-283 MIR-216 AAUAUCA MIMAT0024969 None HE669534 41197 41253 + Nephrozoa Nephrozoa Unknown 1
Hme-Mir-210-P4 hme-mir-3286 MIR-210 UGUGCGU None MIMAT0024979 HE670563 208640 208703 - H. melpomene Bilateria No 1
Hme-Mir-210-P3 hme-mir-210 MIR-210 UUGUGCG None MIMAT0024947 HE670563 209742 209798 - H. melpomene Bilateria No 1
Hme-Mir-193-P2 hme-mir-2788 MIR-193 GGGGUUU MIMAT0020536 MIMAT0020537 HE667780 843563 843618 + Bilateria Bilateria No 1 1
Hme-Mir-193-P1 hme-mir-193 MIR-193 ACUGGCC MIMAT0020538 MIMAT0020539 HE667780 841382 841438 + Bilateria Bilateria No 1
Hme-Mir-190 hme-mir-190 MIR-190 GAUAUGU MIMAT0024944 None HE671536 265220 265277 - Bilateria Bilateria No 1
Hme-Mir-184 hme-mir-184 MIR-184 GGACGGA None MIMAT0024943 HE670778 175932 175988 + Nephrozoa Nephrozoa No 1
Hme-Mir-137 hme-mir-137 MIR-137 UAUUGCU None MIMAT0024939 HE671482 4162 4222 + Bilateria Bilateria No 1
Hme-Mir-133 hme-mir-133 MIR-133 UGGUCCC None MIMAT0024938 HE672073 1153888 1153948 - Bilateria Bilateria No 1
Hme-Mir-124 hme-mir-124 MIR-124 AAGGCAC None MIMAT0024937 HE672073 380452 380509 + Bilateria Bilateria No 1
Hme-Mir-96-P3 hme-mir-263a MIR-96 AUGGCAC MIMAT0024949 None HE672064 563354 563413 + Bilateria Bilateria No 1
Hme-Mir-96-P2 hme-mir-263b MIR-96 UUGGCAC MIMAT0024950 None HE670415 2372 2433 - Bilateria Bilateria No 1 1
Hme-Mir-92-P4 hme-mir-92b MIR-92 AUUGCAC None MIMAT0024994 HE672043 129073 129130 + Pancrustacea Bilateria No
Hme-Mir-92-P3 hme-mir-92a MIR-92 AUUGCAC None MIMAT0024993 HE672043 128928 128983 + Pancrustacea Bilateria No
Hme-Mir-87-P2 hme-mir-87 MIR-87 UGAGCAA None MIMAT0024989 HE668834 53115 53175 + Protostomia Protostomia No
Hme-Mir-76 hme-mir-981 MIR-76 UCGUUGU None MIMAT0024999 HE669806 67255 67312 + Nephrozoa Nephrozoa No 1
Hme-Mir-71 hme-mir-71 MIR-71 CUCACUA None MIMAT0024985 HE671256 336024 336085 + Nephrozoa Nephrozoa No 1
Hme-Mir-67 V hme-mir-307 MIR-67 CACAACC None MIMAT0024976 HE671244 79056 79123 - Protostomia Protostomia 2 No 1 1
Hme-Mir-34-P12 hme-mir-34-2 MIR-34 GGCAGUG MIMAT0024983 None HE669997 8038 8096 + H. melpomene Bilateria No 1 1
Hme-Mir-34-P11 hme-mir-34-1 MIR-34 GGCAGUG MIMAT0024983 None HE667979 380 438 - H. melpomene Bilateria No 1
Hme-Mir-33-P9 hme-mir-33-2 MIR-33 UGCAUUG MIMAT0024980 None HE671035 83696 83756 - H. melpomene Bilateria No 1
Hme-Mir-33-P8 hme-mir-33-1 MIR-33 UGCAUUG MIMAT0024980 None HE670818 67948 68008 + H. melpomene Bilateria No 1
Hme-Mir-31 None MIR-31 GGCAAGA None None FASA01202097.1 1291 1349 + Bilateria Bilateria Unknown 1
Hme-Mir-29-P2h hme-mir-998 MIR-29 AGCACCA None MIMAT0025001 HE672080 325259 325313 - Neoptera Bilateria No 1
Hme-Mir-29-P1 hme-mir-285 MIR-29 AGCACCA None MIMAT0024970 HE671036 44655 44713 - Bilateria Bilateria No 1 1
Hme-Mir-22-P2 hme-mir-745 MIR-22 AGCUGCC None MIMAT0024986 HE671337 442728 442786 - Bilateria Bilateria No 1
Hme-Mir-14 hme-mir-14 MIR-14 CAGUCUU None MIMAT0024942 HE671256 64280 64336 + Neoptera Neoptera No
Hme-Mir-12 hme-mir-12 MIR-12 GAGUAUU None MIMAT0024936 HE669534 42572 42850 + Protostomia Protostomia No 1
Hme-Mir-10-P4 hme-mir-993 MIR-10 AAGCUCG None MIMAT0025000 HE667778 86419 86482 + Protostomia Eumetazoa No
Hme-Mir-10-P1 V hme-mir-10 MIR-10 CCCUGUA MIMAT0024932 None HE667778 152725 152782 - Bilateria Eumetazoa 2 No 1
Hme-Mir-9-P12 hme-mir-79 MIR-9 UAAAGCU None MIMAT0024987 HE669612 9693 9752 - Neoptera Bilateria No
Hme-Mir-9-P11 hme-mir-9a MIR-9 CUUUGGU None MIMAT0025003 HE669612 10319 10377 - Neoptera Bilateria No 1
Hme-Mir-9-P10 hme-mir-9b MIR-9 CUUUGGU MIMAT0025002 None HE670875 766577 766635 + Pancrustacea Bilateria No 1
Hme-Mir-9-P9 None MIR-9 UAAAGCU None None HE671859 114241 114299 - Pancrustacea Bilateria No 1
Hme-Mir-8 hme-mir-8 MIR-8 AAUACUG None MIMAT0024988 HE670477 58600 58661 + Nephrozoa Nephrozoa No 1
Hme-Mir-7 hme-mir-7 MIR-7 GGAAGAC MIMAT0024984 None HE670618 34409 34469 - Bilateria Bilateria No 1 1
Hme-Mir-3-P27 hme-mir-2733 MIR-3 CACUGGG None MIMAT0024951 HE671859 110477 110535 - H. melpomene Pancrustacea Unknown
Hme-Mir-3-P26 None MIR-3 CACUGGG None None HE671859 110635 110693 - H. melpomene Pancrustacea No
Hme-Mir-3-P25 None MIR-3 CACUGGG None None HE671859 110796 110850 - H. melpomene Pancrustacea No 1
Hme-Mir-3-P24 None MIR-3 CACUGGG None None HE671859 110937 110990 - H. melpomene Pancrustacea No 1
Hme-Mir-3-P23 None MIR-3 UAGUCAU None None HE671859 111487 111543 - H. melpomene Pancrustacea No 1
Hme-Mir-3-P22 None MIR-3 CACUGGU None None HE671859 111736 111797 - H. melpomene Pancrustacea No 1
Hme-Mir-3-P21 None MIR-3 CACUGGG None None HE671859 112176 112234 - H. melpomene Pancrustacea No 1
Hme-Mir-3-P20 None MIR-3 CACUGGG None None HE671859 112283 112342 - H. melpomene Pancrustacea No
Hme-Mir-3-P19 None MIR-3 CACUGGG None None HE671859 112455 112513 - H. melpomene Pancrustacea No 1
Hme-Mir-3-P18 None MIR-3 CACUGGG None None HE671859 112729 112787 - H. melpomene Pancrustacea No 1
Hme-Mir-3-P17 None MIR-3 CACUGGG None None HE671859 113173 113233 - H. melpomene Pancrustacea No 1
Hme-Mir-3-P16 None MIR-3 CACUGGG None None HE671859 113306 113364 - H. melpomene Pancrustacea No 1 1
Hme-Mir-3-P15 None MIR-3 CACUGGG None None HE671859 113451 113508 - H. melpomene Pancrustacea No 1 1
Hme-Mir-3-P14 None MIR-3 CACUGGG None None HE671859 113699 113757 - H. melpomene Pancrustacea No 1
Hme-Mir-2-P8 hme-mir-308 MIR-2 AUCACAG None MIMAT0024977 HE669504 9991 10044 + Aparaglossata Protostomia No 1
Hme-Mir-2-P7 hme-mir-11 MIR-2 AUCACAG None MIMAT0024934 HE672080 326757 326812 - Neoptera Protostomia No 1
Hme-Mir-2-P4 hme-mir-2c MIR-2 AUCACAG None MIMAT0024973 HE671256 345032 345089 + Arthropoda Protostomia No 1
Hme-Mir-2-P3 V hme-mir-2b MIR-2 AUCACAG None MIMAT0024972 HE671256 344898 344954 + Arthropoda Protostomia 2 No 1
Hme-Mir-2-P2b hme-mir-13b MIR-2 AUCACAG None MIMAT0024941 HE671256 344775 344830 + Neoptera Protostomia No
Hme-Mir-2-P2a hme-mir-13a MIR-2 AUCACAG None MIMAT0024940 HE671256 344637 344695 + Neoptera Protostomia No
Hme-Mir-2-P1 V hme-mir-2a MIR-2 AUCACAG None MIMAT0024971 HE671256 344483 344538 + Arthropoda Protostomia 2 No 1
Hme-Mir-1 hme-mir-1a MIR-1 GGAAUGU None MIMAT0024946 HE672073 1166274 1166332 - Bilateria Bilateria No
Hme-Let-7 hme-let-7 LET-7 GAGGUAG MIMAT0024931 None HE670867 81559 81626 - Bilateria Bilateria No 1
Hme-Iab-4-as None IAB-4 UACGUAU None None HE667775 54413 54475 + Pancrustacea Arthropoda Unknown 1
Hme-Iab-4 None IAB-4 CGUAUAC None None HE667775 54413 54472 - Arthropoda Arthropoda Unknown 1 1
Hme-Bantam hme-bantam BANTAM GAGAUCA None MIMAT0024930 HE670669 51613 51673 + Protostomia Protostomia No

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