MirGeneDB

MirGeneDB ID

Mdo-Mir-96-P3-v2

Family name MIR-96 (all species)
Seed UGGCACU
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID mdo-mir-183
Paralogues Mdo-Mir-96-P1  Mdo-Mir-96-P2  Mdo-Mir-96-P3-v1 
Orthologues Aae-Mir-96-P3  Ami-Mir-96-P3-v1  Ami-Mir-96-P3-v2  Asu-Mir-96-P3  Bfl-Mir-96-P3  Bge-Mir-96-P3  Bta-Mir-96-P3-v1  Bta-Mir-96-P3-v2  Cbr-Mir-96-P3  Cel-Mir-96-P3  Cfa-Mir-96-P3-v1  Cfa-Mir-96-P3-v2  Cgi-Mir-96-P3  Cin-Mir-96-P3  Cli-Mir-96-P3-v1  Cli-Mir-96-P3-v2  Cpi-Mir-96-P3-v1  Cpi-Mir-96-P3-v2  Cpo-Mir-96-P3-v1  Cpo-Mir-96-P3-v2  Dan-Mir-96-P3  Dme-Mir-96-P3  Dmo-Mir-96-P3  Dno-Mir-96-P3-v1  Dno-Mir-96-P3-v2  Dpu-Mir-96-P3  Dre-Mir-96-P3-v1  Dre-Mir-96-P3-v2  Ete-Mir-96-P3-v1  Ete-Mir-96-P3-v2  Gga-Mir-96-P3-v1  Gga-Mir-96-P3-v2  Hme-Mir-96-P3  Hsa-Mir-96-P3-v1  Hsa-Mir-96-P3-v2  Isc-Mir-96-P3  Lan-Mir-96-P3  Lgi-Mir-96-P3  Mml-Mir-96-P3-v1  Mml-Mir-96-P3-v2  Mmu-Mir-96-P3-v1  Mmu-Mir-96-P3-v2  Oan-Mir-96-P3-v1  Oan-Mir-96-P3-v2  Ocu-Mir-96-P3-v1  Ocu-Mir-96-P3-v2  Pfl-Mir-96-P3  Pmi-Mir-96-P3  Rno-Mir-96-P3-v1  Rno-Mir-96-P3-v2  Sha-Mir-96-P3-v1  Sha-Mir-96-P3-v2  Sko-Mir-96-P3  Spu-Mir-96-P3  Sto-Mir-96-P3-v1  Sto-Mir-96-P3-v2  Tca-Mir-96-P3  Tgu-Mir-96-P3  Xtr-Mir-96-P3-v1  Xtr-Mir-96-P3-v2 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(monDom5)
8: 189668278-189668337 [-] UCSC Ensembl
Clustered MiRNAs
(< 10kb from Mir-96-P3-v2)
Mir-96-P2 8: 189660601-189660665 [-] UCSC Ensembl
Mir-96-P1 8: 189667862-189667925 [-] UCSC Ensembl
Mir-96-P3-v1 8: 189668277-189668338 [-] UCSC Ensembl
Mir-96-P3-v2 8: 189668278-189668337 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGGCGGGAGACCAUCACUCCUGUUCUGUGUAUGGCACUGGUAGAAUUCACUGUGAAAACACACUAUCAGUGAAUUACCAAAGGGCCAUAAACAGAGCAGAGAAAGAUCCACAAGCGCCUC
Get precursor sequence
Structure
        10          20        30          40        50         
GGGCGGGAGACCAUCAC-  -         G      AC--|    GA        UGAAAA 
                  UC CUGUUCUGU UAUGGC    UGGUA  AUUCACUG      C
                  AG GACGAGACA AUACCG    ACCAU  UAAGUGAC      A
CUCCGCGAACACCUAGAA  A         A      GGAA^    --        UAUCAC 
.       110       100        90        80          70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Ce He Ki Te
Mature sequence

Mdo-Mir-96-P3-v2_5p

MirBase accessionMIMAT0004146
Sequence
0- AUGGCACUGGUAGAAUUCACUG -22
Get sequence
Validated targets TargetScanVert: mdo-miR-183-5p
Star sequence

Mdo-Mir-96-P3-v2_3p* (predicted)

MirBase accessionMIMAT0026691
Sequence
38- GUGAAUUACCAAAGGGCCAUAA -60
Get sequence
Validated targets TargetScanVert: mdo-miR-183-3p