Mir-96-P3-v2

MirGeneDB ID

Gja-Mir-96-P3

Family name

MIR-96 (all species)

Species

Schlegels Japanese gecko (Gekko japonicus)

MiRBase ID

Paralogues

Gja-Mir-96-P1 Gja-Mir-96-P2 Gja-Mir-96-P3-v1

Orthologues

Aae-Mir-96-P3 Aga-Mir-96-P3 Agr-Mir-96-P3 Ami-Mir-96-P3-v1 Asu-Mir-96-P3 Ava-Mir-96-P3y Ava-Mir-96-P3z Bfl-Mir-96-P3 Bge-Mir-96-P3 Bko-Mir-96-P3 Bla-Mir-96-P3 Bpl-Mir-96-P3 Bta-Mir-96-P3-v1 Cbr-Mir-96-P3 Cel-Mir-96-P3 Cfa-Mir-96-P3-v1 Cin-Mir-96-P3 Cja-Mir-96-P3-v1 Cli-Mir-96-P3-v1 Cmi-Mir-96-P3-v1 Cpi-Mir-96-P3-v1 Cpo-Mir-96-P3-v1 Csc-Mir-96-P3w Csc-Mir-96-P3x Cte-Mir-96-P3 Dan-Mir-96-P3 Dgr-Mir-96-P3 Dlo-Mir-96-P3 Dma-Mir-96-P3 Dme-Mir-96-P3 Dmo-Mir-96-P3 Dno-Mir-96-P3-v1 Dpu-Mir-96-P3 Dre-Mir-96-P3a-v1 Dsi-Mir-96-P3 Dya-Mir-96-P3 Eba-Mir-96-P3 Ebu-Mir-96-P3e Ebu-Mir-96-P3f Eca-Mir-96-P3-v1 Egr-Mir-96-P3 Ete-Mir-96-P3-v1 Gga-Mir-96-P3-v1 Gmo-Mir-96-P3a-v1 Gpa-Mir-96-P3 Gsp-Mir-96-P3 Hme-Mir-96-P3 Hru-Mir-96-P3 Hsa-Mir-96-P3-v1 Isc-Mir-96-P3 Lan-Mir-96-P3 Lch-Mir-96-P3 Lgi-Mir-96-P3 Lhy-Mir-96-P3 Llo-Mir-96-P3 Loc-Mir-96-P3-v1 Lpo-Mir-96-P3r Lpo-Mir-96-P3s Lpo-Mir-96-P3t Lpo-Mir-96-P3u Lpo-Mir-96-P3v Mal-Mir-96-P3a-v1 Mal-Mir-96-P3b-v1 Mdo-Mir-96-P3-v1 Mgi-Mir-96-P3 Mml-Mir-96-P3-v1 Mmr-Mir-96-P3-v1 Mmu-Mir-96-P3-v1 Mom-Mir-96-P3 Mun-Mir-96-P3-v1 Neu-Mir-96-P3-v1 Oan-Mir-96-P3-v1 Ocu-Mir-96-P3-v1 Ofu-Mir-96-P3 Pab-Mir-96-P3-v1 Pau-Mir-96-P3g Pau-Mir-96-P3h Pbv-Mir-96-P3-v1 Pca-Mir-96-P3 Pcr-Mir-96-P3 Pdu-Mir-96-P3 Pfl-Mir-96-P3 Pma-Mir-96-P3o1 Pma-Mir-96-P3o2 Pmi-Mir-96-P3 Pve-Mir-96-P3 Rno-Mir-96-P3-v1 Rph-Mir-96-P3 Sha-Mir-96-P3-v1 Sko-Mir-96-P3 Snu-Mir-96-P3 Spt-Mir-96-P3 Spu-Mir-96-P3 Sro-Mir-96-P3 Sto-Mir-96-P3-v1 Tca-Mir-96-P3 Tgu-Mir-96-P3 Tni-Mir-96-P3a Tni-Mir-96-P3b Tur-Mir-96-P3 War-Mir-96-P3 Xla-Mir-96-P3c-v1 Xla-Mir-96-P3d-v1 Xtr-Mir-96-P3-v1

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(GCF_001447785.1_Gekko_japonicus)

NW_015171061.1: 25416-25475 [+]

Clustered miRNAs
(< 50kb from Mir-96-P3-v2)

Mir-96-P3-v1 NW_015171061.1: 25415-25476 [+]
Mir-96-P3-v2 NW_015171061.1: 25416-25475 [+]
Mir-96-P1 NW_015171061.1: 26651-26714 [+]
Mir-96-P2 NW_015171061.1: 46029-46093 [+]

Variant

Gja-Mir-96-P3-v2

Seed

UGGCACU

Precursor
(pre-Mir +30nt flank)

GCUGGGGCAAAACUCACUCCUAUCCUGUGUAUGGCACUGGUAGAAUUCACUGUGAAAAGACUCUAUCAGUGAAUUACCUUAGGGCCAUAAACAGAGCAGAGAAAGAUCCACGGAACCGCA

Get precursor sequence

Structure

        10          20        30        40        50         
GCUGGGGCAAAACUCAC-  -| AUC    G      A    UAG         UGAAAA 
                  UC CU   CUGU UAUGGC CUGG   AAUUCACUG      G
                  AG GA   GACA AUACCG GAUU   UUAAGUGAC      A
ACGCCAAGGCACCUAGAA  A^ CGA    A      G    CCA         UAUCUC 
.       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Gja-Mir-96-P3-v2_5p

mirBase accession

None

Sequence

0- AUGGCACUGGUAGAAUUCACUGU -23

Get sequence

Star sequence

Gja-Mir-96-P3-v2_3p* (predicted)

mirBase accession

None

Sequence

37- AGUGAAUUACCUUAGGGCCAUAA -60

Get sequence

Variant

Gja-Mir-96-P3-v1

Seed

AUGGCAC

Precursor
(pre-Mir +30nt flank)

GGCUGGGGCAAAACUCACUCCUAUCCUGUGUAUGGCACUGGUAGAAUUCACUGUGAAAAGACUCUAUCAGUGAAUUACCUUAGGGCCAUAAACAGAGCAGAGAAAGAUCCACGGAACCGCAU

Get precursor sequence

Structure

        10           20        30        40        50        60
GGCUGGGGCAAAACUCA---|  CUAUC    G      A    UAG         UGAAAA 
                    CUC     CUGU UAUGGC CUGG   AAUUCACUG      G
                    GAG     GACA AUACCG GAUU   UUAAGUGAC      A
UACGCCAAGGCACCUAGAAA^  ACGA-    A      G    CCA         UAUCUC 
120       110       100         90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Gja-Mir-96-P3-v1_5p

mirBase accession

None

Sequence

0- UAUGGCACUGGUAGAAUUCACUG -23

Get sequence

Star sequence

Gja-Mir-96-P3-v1_3p* (predicted)

mirBase accession

None

Sequence

39- GUGAAUUACCUUAGGGCCAUAAA -62

Get sequence