Mir
Gene
DB
2.1
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113 microRNA genes with seed AUGGCUU
Sort by genome coordinates
Motifs
MirGeneDB ID
MiRBase ID
Family
Seed
5p accession
3p accession
Chromosome
Start
End
Strand
Node of origin (locus)
Node of origin (family)
3' NTU
UG
UGUG
CNNC
▲
Pma-Mir-135-o1
pma-mir-135a
MIR-135
AUGGCUU
MIMAT0019463
MIMAT0019464
NC_046082.1
3812001
3812061
+
P. marinus
Chordata
No
Mun-Mir-135-P1
None
MIR-135
AUGGCUU
None
None
135-P1_LR594637.1:179481054-179481194
41
101
-
Gnathostomata
Chordata
Unknown
Tni-Mir-135-P1
tni-mir-135b
MIR-135
AUGGCUU
MIMAT0003031
None
9
635490
635549
+
Gnathostomata
Chordata
No
1
Gmo-Mir-135-P1
gmo-mir-135b
MIR-135
AUGGCUU
MIMAT0044053
MIMAT0044054
contig475703
148
205
+
Gnathostomata
Chordata
No
1
Mal-Mir-135-P1
None
MIR-135
AUGGCUU
None
None
KV884993.1
327112
327171
-
Gnathostomata
Chordata
No
1
Loc-Mir-135-P1
None
MIR-135
AUGGCUU
None
None
LG5
50409839
50409898
-
Gnathostomata
Chordata
No
Mun-Mir-135-P2
None
MIR-135
AUGGCUU
None
None
135-P2_LR594640.1:25704422-25704681
101
160
+
Gnathostomata
Chordata
Unknown
Cmi-Mir-135-P4
None
MIR-135
AUGGCUU
None
None
KI635924.1
1082501
1082562
+
Gnathostomata
Chordata
No
Oan-Mir-135-P4
oan-mir-135b-1
MIR-135
AUGGCUU
MIMAT0006870
MIMAT0006871
NC_041734.1
61618119
61618179
-
Gnathostomata
Chordata
Yes
Bfl-Mir-135-P5
bfl-mir-135b-1
MIR-135
AUGGCUU
MIMAT0010194
None
NC_049983.1
13598256
13598313
-
Branchiostoma
Chordata
Unknown
1
Bla-Mir-135-P5
None
MIR-135
AUGGCUU
None
None
Sc0000129
103824
103881
+
Branchiostoma
Chordata
No
1
Tgu-Mir-135-P1
tgu-mir-135b
MIR-135
AUGGCUU
MIMAT0014560
None
12
14220723
14220783
+
Gnathostomata
Chordata
No
1
Sto-Mir-135-P1
None
MIR-135
AUGGCUU
None
None
BFAA01001833.1
127580
127639
-
Gnathostomata
Chordata
No
1
Hsa-Mir-135-P1
hsa-mir-135a-1
MIR-135
AUGGCUU
MIMAT0000428
MIMAT0004595
chr3
52294233
52294292
-
Gnathostomata
Chordata
No
1
Ami-Mir-135-P1
ami-mir-135-1
MIR-135
AUGGCUU
MIMAT0038149
MIMAT0038150
NW_017713629.1
3671053
3671113
+
Gnathostomata
Chordata
No
1
Cmi-Mir-135-P1
None
MIR-135
AUGGCUU
None
None
KI635869.1
7284973
7285032
-
Gnathostomata
Chordata
No
1
Mml-Mir-135-P1
mml-mir-135a-1
MIR-135
AUGGCUU
MIMAT0002251
MIMAT0031029
chr2
89922657
89922716
+
Gnathostomata
Chordata
No
1
Cpi-Mir-135-P1
cpi-mir-135-1
MIR-135
AUGGCUU
MIMAT0037754
MIMAT0037755
JH584490
748614
748674
-
Gnathostomata
Chordata
No
1
Mmu-Mir-135-P1
mmu-mir-135a-1
MIR-135
AUGGCUU
MIMAT0000147
MIMAT0004531
chr9
106154140
106154199
+
Gnathostomata
Chordata
No
1
Aca-Mir-135-P1
aca-mir-135-1
MIR-135
AUGGCUU
MIMAT0021750
MIMAT0021751
2
153285359
153285419
+
Gnathostomata
Chordata
No
1
Rno-Mir-135-P1
None
MIR-135
AUGGCUU
None
None
chr8
114847396
114847455
+
Gnathostomata
Chordata
Unknown
1
Pbv-Mir-135-P1
pbv-mir-135-1
MIR-135
AUGGCUU
MIMAT0038941
MIMAT0038942
KE958355.1
30933
30993
-
Gnathostomata
Chordata
No
1
Cpo-Mir-135-P1
cpo-mir-135a-1
MIR-135
AUGGCUU
MIMAT0046992
MIMAT0046993
scaffold_8
27281775
27281834
-
Gnathostomata
Chordata
Unknown
1
Gja-Mir-135-P1
None
MIR-135
AUGGCUU
None
None
NW_015166421.1
1929383
1929443
+
Gnathostomata
Chordata
No
1
Ocu-Mir-135-P1
ocu-mir-135a-1
MIR-135
AUGGCUU
MIMAT0048227
MIMAT0048228
chr9
19378424
19378483
-
Gnathostomata
Chordata
No
1
Spt-Mir-135-P1
None
MIR-135
AUGGCUU
None
None
QEPC01007158.1
692713
692773
-
Gnathostomata
Chordata
Unknown
1
Cfa-Mir-135-P1
cfa-mir-135a-1
MIR-135
AUGGCUU
MIMAT0010196
None
chr20
37461833
37461892
+
Gnathostomata
Chordata
No
1
Bta-Mir-135-P1
bta-mir-135a-1
MIR-135
AUGGCUU
MIMAT0009228
None
NC_037349.1
48588917
48588976
+
Gnathostomata
Chordata
No
1
Dno-Mir-135-P1
dno-mir-135a-1
MIR-135
AUGGCUU
MIMAT0047639
MIMAT0047640
JH567460
186933
186992
-
Gnathostomata
Chordata
No
1
Ete-Mir-135-P1
None
MIR-135
AUGGCUU
None
None
JH980390
4724832
4724890
-
Gnathostomata
Chordata
Unknown
1
Lch-Mir-135-P1
None
MIR-135
AUGGCUU
None
None
JH126569.1
3154915
3154976
+
Gnathostomata
Chordata
Unknown
1
Oan-Mir-135-P1
oan-mir-135b-2
MIR-135
AUGGCUU
MIMAT0006870
MIMAT0031114
NC_041750.1
16824873
16824932
+
Gnathostomata
Chordata
Yes
1
Gga-Mir-135-P1
gga-mir-135a-1
MIR-135
AUGGCUU
MIMAT0001099
MIMAT0031036
12
3411670
3411730
-
Gnathostomata
Chordata
No
1
Dre-Mir-135-P1
dre-mir-135b
MIR-135
AUGGCUU
MIMAT0003032
MIMAT0032006
chr8
26005600
26005660
+
Gnathostomata
Chordata
No
1
1
Cli-Mir-135-P1
cli-mir-135-1
MIR-135
AUGGCUU
MIMAT0038514
MIMAT0038515
scaffold335
781848
781908
-
Gnathostomata
Chordata
No
1
Pma-Mir-135-o2
pma-mir-135b
MIR-135
AUGGCUU
MIMAT0019465
None
NC_046098.1
7520135
7520200
-
P. marinus
Chordata
Unknown
1
Tgu-Mir-135-P2
tgu-mir-135a-1
MIR-135
AUGGCUU
MIMAT0014559
MIMAT0014643
1A
43566367
43566426
+
Gnathostomata
Chordata
No
1
Sto-Mir-135-P2
None
MIR-135
AUGGCUU
None
None
BFAA01010850.1
79525
79583
+
Gnathostomata
Chordata
No
1
Hsa-Mir-135-P2
hsa-mir-135a-2
MIR-135
AUGGCUU
MIMAT0000428
MIMAT0037309
chr12
97563834
97563893
+
Gnathostomata
Chordata
No
1
Ami-Mir-135-P2
ami-mir-135-2
MIR-135
AUGGCUU
MIMAT0038149
MIMAT0038151
NW_017714414.1
12728185
12728244
-
Gnathostomata
Chordata
No
1
Cmi-Mir-135-P2
None
MIR-135
AUGGCUU
None
None
KI636091.1
65455
65514
-
Gnathostomata
Chordata
No
1
Mml-Mir-135-P2
mml-mir-135a-2
MIR-135
AUGGCUU
MIMAT0002251
MIMAT0026567
chr11
97414798
97414857
+
Gnathostomata
Chordata
No
1
Cpi-Mir-135-P2
cpi-mir-135-2
MIR-135
AUGGCUU
MIMAT0037754
MIMAT0037756
JH584806
2870629
2870688
+
Gnathostomata
Chordata
No
1
Mmu-Mir-135-P2
mmu-mir-135a-2
MIR-135
AUGGCUU
MIMAT0000147
MIMAT0017064
chr10
92072104
92072163
-
Gnathostomata
Chordata
No
1
Aca-Mir-135-P2
aca-mir-135-2
MIR-135
AUGGCUU
MIMAT0021750
MIMAT0021752
5
29776333
29776392
-
Gnathostomata
Chordata
No
1
Rno-Mir-135-P2
rno-mir-135a
MIR-135
AUGGCUU
MIMAT0000841
MIMAT0004732
chr7
32894895
32894954
-
Gnathostomata
Chordata
No
1
Pbv-Mir-135-P2
pbv-mir-135-2
MIR-135
AUGGCUU
MIMAT0038941
MIMAT0038943
KE952989.1
876724
876783
-
Gnathostomata
Chordata
No
1
Cpo-Mir-135-P2
cpo-mir-135a-2
MIR-135
AUGGCUU
MIMAT0046992
MIMAT0046994
scaffold_9
4516695
4516754
-
Gnathostomata
Chordata
Unknown
1
Gja-Mir-135-P2
None
MIR-135
AUGGCUU
None
None
NW_015161984.1
364369
364428
+
Gnathostomata
Chordata
No
1
Ocu-Mir-135-P2
ocu-mir-135a-2
MIR-135
AUGGCUU
MIMAT0048227
MIMAT0048229
chr4
76791386
76791445
+
Gnathostomata
Chordata
No
1
Spt-Mir-135-P2
None
MIR-135
AUGGCUU
None
None
QEPC01005745.1
488134
488193
-
Gnathostomata
Chordata
Unknown
1
Cfa-Mir-135-P2
cfa-mir-135a-2
MIR-135
AUGGCUU
MIMAT0010196
MIMAT0006628
chr15
37181420
37181479
+
Gnathostomata
Chordata
No
1
Bta-Mir-135-P2
bta-mir-135a-2
MIR-135
AUGGCUU
MIMAT0009228
None
NC_037332.1
61775977
61776036
+
Gnathostomata
Chordata
No
1
Xtr-Mir-135-P2
xtr-mir-135-1
MIR-135
AUGGCUU
MIMAT0003598
None
chr3
41571717
41571776
+
Gnathostomata
Chordata
No
1
Dno-Mir-135-P2
dno-mir-135a-2
MIR-135
AUGGCUU
MIMAT0047639
MIMAT0047641
JH569142
1448131
1448190
+
Gnathostomata
Chordata
Yes
1
Ete-Mir-135-P2
None
MIR-135
AUGGCUU
None
None
JH980300
30324343
30324402
-
Gnathostomata
Chordata
No
1
Lch-Mir-135-P2
None
MIR-135
AUGGCUU
None
None
JH126824.1
658696
658755
-
Gnathostomata
Chordata
Unknown
1
Sha-Mir-135-P2
sha-mir-135a
MIR-135
AUGGCUU
MIMAT0022823
None
GL861598.1
2879589
2879648
+
Gnathostomata
Chordata
No
1
Mdo-Mir-135-P2
mdo-mir-135a
MIR-135
AUGGCUU
MIMAT0004108
MIMAT0026666
8
74872662
74872721
+
Gnathostomata
Chordata
No
1
Oan-Mir-135-P2
oan-mir-135a
MIR-135
AUGGCUU
None
MIMAT0007193
NC_041741.1
36251177
36251236
+
Gnathostomata
Chordata
Yes
1
Gga-Mir-135-P2
gga-mir-135a-2
MIR-135
AUGGCUU
MIMAT0001099
MIMAT0026489
1
46333921
46333980
+
Gnathostomata
Chordata
No
1
Cli-Mir-135-P2
cli-mir-135-2
MIR-135
AUGGCUU
MIMAT0038514
MIMAT0038516
scaffold557
971015
971074
-
Gnathostomata
Chordata
No
1
Loc-Mir-135-P2
None
MIR-135
AUGGCUU
None
None
LG8
7556958
7557017
+
Gnathostomata
Chordata
No
1
Xla-Mir-135-P2d
None
MIR-135
AUGGCUU
None
None
NC_030729.1
94389028
94389087
-
X. laevis
Chordata
No
1
Tgu-Mir-135-P4
tgu-mir-135a-2
MIR-135
AUGGCUU
MIMAT0014559
MIMAT0031089
26
3233049
3233109
-
Gnathostomata
Chordata
No
1
Sto-Mir-135-P4
None
MIR-135
AUGGCUU
None
None
BFAA01000334.1
138445
138504
-
Gnathostomata
Chordata
No
1
Hsa-Mir-135-P4
hsa-mir-135b
MIR-135
AUGGCUU
MIMAT0000758
MIMAT0004698
chr1
205448323
205448383
-
Gnathostomata
Chordata
No
1
Ami-Mir-135-P4
ami-mir-135-3
MIR-135
AUGGCUU
MIMAT0038149
MIMAT0038152
NW_017713700.1
1169636
1169696
+
Gnathostomata
Chordata
No
1
Mml-Mir-135-P4
mml-mir-135b
MIR-135
AUGGCUU
MIMAT0006191
MIMAT0026820
chr1
161135786
161135846
+
Gnathostomata
Chordata
No
1
Cpi-Mir-135-P4
cpi-mir-135-3
MIR-135
AUGGCUU
MIMAT0037754
MIMAT0037757
JH584805
1262856
1262916
-
Gnathostomata
Chordata
No
1
Mmu-Mir-135-P4
mmu-mir-135b
MIR-135
AUGGCUU
MIMAT0000612
MIMAT0017044
chr1
132198103
132198163
+
Gnathostomata
Chordata
No
1
Aca-Mir-135-P4
aca-mir-135-3
MIR-135
AUGGCUU
MIMAT0021750
MIMAT0021753
GL343228.1
62430
62490
-
Gnathostomata
Chordata
No
1
Rno-Mir-135-P4
rno-mir-135b
MIR-135
AUGGCUU
MIMAT0000611
MIMAT0017043
chr13
48977001
48977061
+
Gnathostomata
Chordata
No
1
Pbv-Mir-135-P4
pbv-mir-135-3
MIR-135
AUGGCUU
MIMAT0038941
MIMAT0038944
KE954012.1
257845
257905
-
Gnathostomata
Chordata
No
1
Cpo-Mir-135-P4
cpo-mir-135b
MIR-135
AUGGCUU
MIMAT0046995
MIMAT0046996
scaffold_12
17315920
17315980
+
Gnathostomata
Chordata
No
1
Gja-Mir-135-P4
None
MIR-135
AUGGCUU
None
None
NW_015171510.1
461162
461222
+
Gnathostomata
Chordata
No
1
Ocu-Mir-135-P4
ocu-mir-135b
MIR-135
AUGGCUU
MIMAT0048230
MIMAT0048231
chr16
66692191
66692251
+
Gnathostomata
Chordata
No
1
Spt-Mir-135-P4
None
MIR-135
AUGGCUU
None
None
QEPC01004435.1
755813
755873
+
Gnathostomata
Chordata
Unknown
1
Cfa-Mir-135-P4
cfa-mir-135b
MIR-135
AUGGCUU
MIMAT0009839
None
chr38
1926572
1926632
-
Gnathostomata
Chordata
No
1
Xla-Mir-135-P4
None
MIR-135
AUGGCUU
None
None
NW_016694943.1
61510
61569
+
Gnathostomata
Chordata
No
1
Bta-Mir-135-P4
bta-mir-135b
MIR-135
AUGGCUU
MIMAT0009229
None
NC_037343.1
3197455
3197515
-
Gnathostomata
Chordata
Yes
1
Xtr-Mir-135-P4
xtr-mir-135-2
MIR-135
AUGGCUU
MIMAT0003598
None
chr2
64757303
64757362
-
Gnathostomata
Chordata
No
1
Dno-Mir-135-P4
dno-mir-135b
MIR-135
AUGGCUU
MIMAT0047642
MIMAT0047643
JH563639
28397
28457
+
Gnathostomata
Chordata
No
1
Mun-Mir-135-P4
None
MIR-135
AUGGCUU
None
None
135-P3_LR594643.1:4420868-4421009
42
101
-
Gnathostomata
Chordata
Unknown
1
Ete-Mir-135-P4
None
MIR-135
AUGGCUU
None
None
JH980299
31757625
31757685
-
Gnathostomata
Chordata
Unknown
1
Lch-Mir-135-P4
None
MIR-135
AUGGCUU
None
None
JH126599.1
251546
251606
+
Gnathostomata
Chordata
Unknown
1
Sha-Mir-135-P4
None
MIR-135
AUGGCUU
None
None
GL856779.1
1605819
1605879
-
Gnathostomata
Chordata
No
1
Mdo-Mir-135-P4
mdo-mir-135b
MIR-135
AUGGCUU
MIMAT0004109
MIMAT0026667
2
111348493
111348553
-
Gnathostomata
Chordata
No
1
Gga-Mir-135-P4
gga-mir-135a-3
MIR-135
AUGGCUU
MIMAT0001099
MIMAT0031038
26
2124466
2124526
-
Gnathostomata
Chordata
No
1
Cli-Mir-135-P4
cli-mir-135-3
MIR-135
AUGGCUU
MIMAT0038514
MIMAT0038517
scaffold176
178807
178867
+
Gnathostomata
Chordata
No
1
Loc-Mir-135-P4
None
MIR-135
AUGGCUU
None
None
LG3
34097469
34097529
+
Gnathostomata
Chordata
No
1
Bfl-Mir-135-P6
bfl-mir-135a-1
MIR-135
AUGGCUU
MIMAT0009992
None
NC_049983.1
13598038
13598096
-
Branchiostoma
Chordata
Unknown
1
1
Bla-Mir-135-P6
None
MIR-135
AUGGCUU
None
None
Sc0000129
104052
104110
+
Branchiostoma
Chordata
No
1
1
Cin-Mir-135-P7
cin-mir-132-2
MIR-135
AUGGCUU
MIMAT0016425
None
HT000116.1
70787
70845
+
C. intestinalis
Chordata
No
1
1
Cin-Mir-135-P8
cin-mir-135
MIR-135
AUGGCUU
MIMAT0016409
MIMAT0016410
HT000116.1
71231
71286
+
C. intestinalis
Chordata
No
1
Ebu-Mir-135-P9
None
MIR-135
AUGGCUU
None
None
FYBX02000030.1
2040214
2040279
+
E. burgeri
Chordata
Unknown
1
Ebu-Mir-135-P10
None
MIR-135
AUGGCUU
None
None
FYBX02010664.1
1778976
1779034
+
E. burgeri
Chordata
Unknown
1
Tni-Mir-135-P2a
None
MIR-135
AUGGCUU
None
None
13
5265577
5265638
+
Clupeocephala
Chordata
Unknown
1
Gmo-Mir-135-P2a
gmo-mir-135a
MIR-135
AUGGCUU
MIMAT0044328
None
scaffold02980
68878
68937
-
Clupeocephala
Chordata
Unknown
1
1
Mal-Mir-135-P2a
None
MIR-135
AUGGCUU
None
None
KV884895.1
242417
242476
-
Clupeocephala
Chordata
No
1
Dre-Mir-135-P2a
dre-mir-135a
MIR-135
AUGGCUU
MIMAT0003348
None
chr25
31044133
31044192
-
Clupeocephala
Chordata
No
1
Tni-Mir-135-P4a
tni-mir-135a
MIR-135
AUGGCUU
MIMAT0003052
None
11
11400949
11401009
-
Clupeocephala
Chordata
Unknown
1
Gmo-Mir-135-P4a
gmo-mir-135c-1
MIR-135
AUGGCUU
MIMAT0044130
MIMAT0044178
GeneScaffold_2161
18287
18347
-
Clupeocephala
Chordata
No
1
Mal-Mir-135-P4a
None
MIR-135
AUGGCUU
None
None
KV884929.1
82863
82923
+
Clupeocephala
Chordata
No
1
Dre-Mir-135-P4a
dre-mir-135c-1
MIR-135
AUGGCUU
MIMAT0001833
None
chr11
38175079
38175140
-
Clupeocephala
Chordata
No
1
Tni-Mir-135-P2b
None
MIR-135
AUGGCUU
None
None
19
3913178
3913236
-
Clupeocephala
Chordata
No
1
Gmo-Mir-135-P2b
gmo-mir-135d
MIR-135
AUGGCUU
MIMAT0044259
MIMAT0044260
GeneScaffold_4080
29905
29964
-
Clupeocephala
Chordata
No
1
Mal-Mir-135-P2b
None
MIR-135
AUGGCUU
None
None
KV884729.1
4420321
4420379
-
Clupeocephala
Chordata
No
1
Tni-Mir-135-P4b
None
MIR-135
AUGGCUU
None
None
9
8239055
8239116
-
Clupeocephala
Chordata
Unknown
1
Gmo-Mir-135-P4b
gmo-mir-135c-2
MIR-135
AUGGCUU
MIMAT0044130
None
GeneScaffold_1609
1266799
1266861
+
Clupeocephala
Chordata
No
1
Mal-Mir-135-P4b
None
MIR-135
AUGGCUU
None
None
KV884806.1
367986
368047
-
Clupeocephala
Chordata
No
1
Dre-Mir-135-P4b
dre-mir-135c-2
MIR-135
AUGGCUU
MIMAT0001833
None
chr23
18063203
18063264
-
Clupeocephala
Chordata
No
1
Xla-Mir-135-P2c
xla-mir-135
MIR-135
AUGGCUU
MIMAT0046447
MIMAT0046448
NC_030728.1
43916937
43916996
+
X. laevis
Chordata
No
1
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