MirGeneDB 3.0
108 microRNA genes with seed AUGGCAC
Sort by genome coordinates Motifs
MirGeneDB ID ▼ MiRBase ID Family Seed 5p accession 3p accession Chromosome Start End Strand Node of origin (locus) Node of origin (family) Iso­miR 3' NTU  UG  UGUG CNNC
Cpo-Mir-506-P2b cpo-mir-507c MIR-506 AUGGCAC MIMAT0047319 MIMAT0047320 scaffold_84 2771646 2771702 + Eutheria Eutheria No 1 1
Ava-Mir-96-P3z None MIR-96 AUGGCAC None None CP075497.1 4909754 4909816 + A. vaga Bilateria No 1
Ava-Mir-96-P3y None MIR-96 AUGGCAC None None CP075492.1 10879008 10879069 + A. vaga Bilateria No
Csc-Mir-96-P3x None MIR-96 AUGGCAC None None NW_019385963.1 35887 35949 - C. sculpturatus Bilateria No 1
Csc-Mir-96-P3w None MIR-96 AUGGCAC None None NW_019385290.1 223516 223575 + C. sculpturatus Bilateria No 1
Lpo-Mir-96-P3v None MIR-96 AUGGCAC None None NW_013665621.1 1346537 1346596 - L. polyphemus Bilateria Unknown 1
Lpo-Mir-96-P3u None MIR-96 AUGGCAC None None NW_013665647.1 250244 250303 - L. polyphemus Bilateria Unknown 1 1
Lpo-Mir-96-P3t None MIR-96 AUGGCAC None None NW_013665634.1 1441897 1441956 + L. polyphemus Bilateria Unknown 1 1
Lpo-Mir-96-P3s None MIR-96 AUGGCAC None None NW_013666424.1 50875 50934 + L. polyphemus Bilateria Unknown
Lpo-Mir-96-P3r None MIR-96 AUGGCAC None None NW_013665929.1 544290 544349 - L. polyphemus Bilateria Unknown 1
Pma-Mir-96-P3o2 None MIR-96 AUGGCAC None None NC_046114.1 7244256 7244315 + P. marinus Bilateria Unknown 1
Pma-Mir-96-P3o1 pma-mir-183 MIR-96 AUGGCAC MIMAT0019491 MIMAT0019492 NC_046104.1 2254548 2254609 - P. marinus Bilateria Unknown 1 1
Pau-Mir-96-P3h None MIR-96 AUGGCAC None None NMRA01000078.1 468635 468693 + P. australis Bilateria Unknown 1
Pau-Mir-96-P3g None MIR-96 AUGGCAC None None NMRA01000382.1 314465 314523 + P. australis Bilateria Unknown 1 1
Ebu-Mir-96-P3f None MIR-96 AUGGCAC None None FYBX02009661.1 1101010 1101067 - E. burgeri Bilateria Unknown 1
Ebu-Mir-96-P3e None MIR-96 AUGGCAC None None FYBX02009823.1 3458408 3458467 - E. burgeri Bilateria Unknown 1
Xla-Mir-96-P3d V xla-mir-183 MIR-96 AUGGCAC MIMAT0046493 MIMAT0046494 NC_030729.1 63429415 63429476 - X. laevis Bilateria 2 No 1 1
Xla-Mir-96-P3c V None MIR-96 AUGGCAC None None NC_030728.1 77405965 77406026 + X. laevis Bilateria 2 No 1 1
Mal-Mir-96-P3b V None MIR-96 AUGGCAC None None KV884693.1 180999 181060 + Clupeocephala Bilateria 2 No 1
Tni-Mir-96-P3b None MIR-96 AUGGCAC None None 13 5040154 5040215 - Clupeocephala Bilateria Unknown 1
Mal-Mir-96-P3a V None MIR-96 AUGGCAC None None KV884729.1 3066306 3066367 - Clupeocephala Bilateria 2 No 1 1
Gmo-Mir-96-P3a V gmo-mir-183 MIR-96 AUGGCAC MIMAT0044261 MIMAT0044262 GeneScaffold_4098 12669 12730 + Clupeocephala Bilateria 2 No 1 1
Dre-Mir-96-P3a V dre-mir-183 MIR-96 AUGGCAC MIMAT0001273 MIMAT0031921 chr4 15074581 15074642 + Clupeocephala Bilateria 2 Yes 1 1
Tni-Mir-96-P3a tni-mir-183 MIR-96 AUGGCAC MIMAT0003090 None 19 3385640 3385701 - Clupeocephala Bilateria Unknown 1 1
Xtr-Mir-96-P3 V xtr-mir-183 MIR-96 AUGGCAC MIMAT0003612 None chr3 77399664 77399725 + Bilateria Bilateria 2 No 1 1
Sto-Mir-96-P3 V None MIR-96 AUGGCAC None None BFAA01006258.1 22496 22557 - Bilateria Bilateria 2 No 1
Sha-Mir-96-P3 V None MIR-96 AUGGCAC None None GL861654.1 986809 986870 - Bilateria Bilateria 2 No 1 1
Rno-Mir-96-P3 V rno-mir-183 MIR-96 AUGGCAC MIMAT0000860 MIMAT0017141 chr4 57463591 57463652 - Bilateria Bilateria 2 No 1 1
Pbv-Mir-96-P3 V pbv-mir-183 MIR-96 AUGGCAC MIMAT0038982 None KE958924.1 50061 50122 - Bilateria Bilateria 2 Unknown 1
Pab-Mir-96-P3 V None MIR-96 AUGGCAC None None CM054685.2 127058037 127058098 - Bilateria Bilateria 2 Unknown 1 1
Ocu-Mir-96-P3 V ocu-mir-183 MIR-96 AUGGCAC MIMAT0048287 MIMAT0048288 chr7 14826894 14826955 + Bilateria Bilateria 2 No 1 1
Oan-Mir-96-P3 V oan-mir-183 MIR-96 AUGGCAC MIMAT0006805 None NC_041737.1 47132912 47132973 - Bilateria Bilateria 2 Unknown 1 1
Neu-Mir-96-P3 V None MIR-96 AUGGCAC None None CM051815.1 120428795 120428856 + Bilateria Bilateria 2 Unknown 1
Mun-Mir-96-P3 V None MIR-96 AUGGCAC None None LR594641.1 18222914 18222975 + Bilateria Bilateria 2 Unknown 1
Mmu-Mir-96-P3 V mmu-mir-183 MIR-96 AUGGCAC MIMAT0000212 MIMAT0004539 chr6 30169671 30169732 - Bilateria Bilateria 2 No 1 1
Mmr-Mir-96-P3 V None MIR-96 AUGGCAC None None CM007671.1 21663785 21663846 + Bilateria Bilateria 2 Unknown 1 1
Mml-Mir-96-P3 V mml-mir-183 MIR-96 AUGGCAC MIMAT0002783 MIMAT0026603 CM014338.1 156053136 156053197 - Bilateria Bilateria 2 No 1 1
Mdo-Mir-96-P3 V mdo-mir-183 MIR-96 AUGGCAC MIMAT0004146 MIMAT0026691 8 189668277 189668338 - Bilateria Bilateria 2 No 1 1
Loc-Mir-96-P3 V None MIR-96 AUGGCAC None None LG8 20420183 20420244 - Bilateria Bilateria 2 Unknown 1 1
Hsa-Mir-96-P3 V hsa-mir-183 MIR-96 AUGGCAC MIMAT0000261 MIMAT0004560 chr7 129774927 129774988 - Bilateria Bilateria 2 No 1 1
Gja-Mir-96-P3 V None MIR-96 AUGGCAC None None NW_015171061.1 25415 25476 + Bilateria Bilateria 2 Unknown 1
Gga-Mir-96-P3 V gga-mir-183 MIR-96 AUGGCAC MIMAT0001191 None 1 1479855 1479916 - Bilateria Bilateria 2 No 1 1
Ete-Mir-96-P3 V None MIR-96 AUGGCAC None None JH980321 22675320 22675381 - Bilateria Bilateria 2 No 1 1
Eca-Mir-96-P3 V eca-mir-183 MIR-96 AUGGCAC MIMAT0012938 None CM009151.1 84575896 84575957 - Bilateria Bilateria 2 No 1 1
Dno-Mir-96-P3 V dno-mir-183 MIR-96 AUGGCAC MIMAT0047701 MIMAT0047702 JH568910 1129147 1129208 - Bilateria Bilateria 2 No 1 1
Cpo-Mir-96-P3 V cpo-mir-183 MIR-96 AUGGCAC MIMAT0047050 MIMAT0047051 scaffold_11 50142394 50142455 - Bilateria Bilateria 2 No 1 1
Cpi-Mir-96-P3 V cpi-mir-183 MIR-96 AUGGCAC MIMAT0037800 None JH584440 1633083 1633144 + Bilateria Bilateria 2 Unknown 1 1
Cmi-Mir-96-P3 V None MIR-96 AUGGCAC None None KI635871.1 2243506 2243567 + Bilateria Bilateria 2 No 1
Cli-Mir-96-P3 V cli-mir-183 MIR-96 AUGGCAC MIMAT0038558 MIMAT0038559 scaffold121 1261591 1261652 + Bilateria Bilateria 2 No 1 1
Cja-Mir-96-P3 V None MIR-96 AUGGCAC None None CM021922.1 114707014 114707075 + Bilateria Bilateria 2 Unknown 1
Cfa-Mir-96-P3 V cfa-mir-183 MIR-96 AUGGCAC MIMAT0006621 None chr14 7068542 7068603 + Bilateria Bilateria 2 Yes 1 1
Bta-Mir-96-P3 V bta-mir-183 MIR-96 AUGGCAC MIMAT0009245 None NC_037331.1 93596161 93596222 - Bilateria Bilateria 2 No 1 1
Ami-Mir-96-P3 V ami-mir-183 MIR-96 AUGGCAC MIMAT0038196 MIMAT0038197 NW_017709854.1 28193883 28193944 + Bilateria Bilateria 2 No 1 1
War-Mir-96-P3 None MIR-96 AUGGCAC None None WNLI01004405.1 1535 1590 + Bilateria Bilateria Unknown 1
Tur-Mir-96-P3 tur-mir-263a MIR-96 AUGGCAC MIMAT0023112 MIMAT0023113 HE587335.1 152638 152699 - Bilateria Bilateria No 1
Tgu-Mir-96-P3 tgu-mir-183 MIR-96 AUGGCAC MIMAT0025393 None gnl|ti|1263877921 384 445 - Bilateria Bilateria No 1 1
Tca-Mir-96-P3 tca-mir-263a MIR-96 AUGGCAC MIMAT0010093 MIMAT0019180 LG5 13500413 13500472 - Bilateria Bilateria No 1
Sro-Mir-96-P3 None MIR-96 AUGGCAC None None JANVAR010000428.1 134270 134333 + Bilateria Bilateria No 1
Spu-Mir-96-P3 spu-mir-183 MIR-96 AUGGCAC MIMAT0009684 None AAGJ06000857.1 2625088 2625155 + Bilateria Bilateria No 1
Spt-Mir-96-P3 None MIR-96 AUGGCAC None None QEPC01000343.1 788658 788719 - Bilateria Bilateria Unknown 1
Snu-Mir-96-P3 None MIR-96 AUGGCAC None None CM049306.1 31194595 31194652 - Bilateria Bilateria No 1
Sko-Mir-96-P3 sko-mir-183 MIR-96 AUGGCAC MIMAT0009631 None NW_003114962.1 34337 34398 + Bilateria Bilateria Unknown
Rph-Mir-96-P3 None MIR-96 AUGGCAC None None CM018527.1 7319270 7319328 - Bilateria Bilateria Unknown 1
Pve-Mir-96-P3 None MIR-96 AUGGCAC None None Pve_Chr9 811517933 811517991 + Bilateria Bilateria No 1
Pmi-Mir-96-P3 None MIR-96 AUGGCAC None None JH769268.1 98683 98749 + Bilateria Bilateria No 1 1
Pfl-Mir-96-P3 None MIR-96 AUGGCAC None None LD345584.1 199276 199339 - Bilateria Bilateria Unknown 1 1
Pdu-Mir-96-P3 None MIR-96 AUGGCAC None None JAPTHN010000007.1 11760214 11760273 - Bilateria Bilateria No 1 1
Pcr-Mir-96-P3 None MIR-96 AUGGCAC None None CAJQUW010016852.1 508861 508922 - Bilateria Bilateria No 1
Pca-Mir-96-P3 None MIR-96 AUGGCAC None None KQ724387.1 1916 1978 - Bilateria Bilateria Unknown 1 1
Ofu-Mir-96-P3 None MIR-96 AUGGCAC None None CAIIXF020000005.1 20598463 20598522 - Bilateria Bilateria Unknown 1 1
Mom-Mir-96-P3 None MIR-96 AUGGCAC None None JARFOD010088722.1 2197 2256 - Bilateria Bilateria Unknown 1
Mgi-Mir-96-P3 None MIR-96 AUGGCAC None None scaffold626 18351 18408 + Bilateria Bilateria No 1
Llo-Mir-96-P3 None MIR-96 AUGGCAC None None OU342998.1 8190036 8190096 - Bilateria Bilateria Unknown
Lhy-Mir-96-P3 None MIR-96 AUGGCAC None None scaffold68396_29.2 5026 5083 - Bilateria Bilateria Unknown 1
Lgi-Mir-96-P3 lgi-mir-263b MIR-96 AUGGCAC MIMAT0009584 None LOTGIsca_71 756862 756922 + Bilateria Bilateria Unknown 1 1
Lch-Mir-96-P3 None MIR-96 AUGGCAC None None JH127218.1 516970 517031 - Bilateria Bilateria Unknown 1 1
Lan-Mir-96-P3 None MIR-96 AUGGCAC None None LFEI01000342 92452 92511 - Bilateria Bilateria Unknown 1
Isc-Mir-96-P3 isc-mir-263a MIR-96 AUGGCAC MIMAT0012692 None NW_024609883.1 66587829 66587891 - Bilateria Bilateria No 1
Hru-Mir-96-P3 None MIR-96 AUGGCAC None None JALGQA010000016.1 20462852 20462910 - Bilateria Bilateria Unknown 1
Hme-Mir-96-P3 hme-mir-263a MIR-96 AUGGCAC MIMAT0024949 None HE672064 563354 563413 + Bilateria Bilateria No 1
Gsp-Mir-96-P3 None MIR-96 AUGGCAC None None OX940785.1 2206193 2206266 + Bilateria Bilateria Unknown 1
Gpa-Mir-96-P3 None MIR-96 AUGGCAC None None Scaffold45 994006 994084 + Bilateria Bilateria No 1
Egr-Mir-96-P3 egr-mir-10247 MIR-96 AUGGCAC MIMAT0041239 MIMAT0041240 APAU02000279.1 25700 25755 + Bilateria Bilateria No
Eba-Mir-96-P3 None MIR-96 AUGGCAC None None WURV02179177.1 4585 4641 + Bilateria Bilateria Unknown 1
Dya-Mir-96-P3 dya-mir-263a MIR-96 AUGGCAC MIMAT0009114 None 2L 8374846 8374908 - Bilateria Bilateria No 1
Dsi-Mir-96-P3 dsi-mir-263a MIR-96 AUGGCAC MIMAT0008851 None 2L 11585671 11585733 - Bilateria Bilateria No 1
Dpu-Mir-96-P3 dpu-mir-263a MIR-96 AUGGCAC MIMAT0012649 None DAPPUscaffold_87 475620 475711 + Bilateria Bilateria No 1 1
Dmo-Mir-96-P3 dmo-mir-263a MIR-96 AUGGCAC MIMAT0008653 None scaffold_6500 16780751 16780812 + Bilateria Bilateria No
Dme-Mir-96-P3 dme-mir-263a MIR-96 AUGGCAC MIMAT0000319 MIMAT0020799 2L 11953424 11953486 - Bilateria Bilateria No 1
Dma-Mir-96-P3 None MIR-96 AUGGCAC None None NC_046180.1 10114339 10114567 - Bilateria Bilateria No 1 1
Dlo-Mir-96-P3 None MIR-96 AUGGCAC None None NC_087240.1 3988111 3988174 - Bilateria Bilateria No 1
Dgr-Mir-96-P3 None MIR-96 AUGGCAC None None CAJFCJ010000006.1 2745893 2745946 + Bilateria Bilateria Unknown 1
Dan-Mir-96-P3 dan-mir-263a MIR-96 AUGGCAC MIMAT0008443 None scaffold_12943 2289727 2289789 + Bilateria Bilateria No 1
Cte-Mir-96-P3 None MIR-96 AUGGCAC None None CAPTEscaffold_823 64095 64178 - Bilateria Bilateria No 1
Cin-Mir-96-P3 cin-mir-183 MIR-96 AUGGCAC MIMAT0006107 MIMAT0015262 HT000094.1 543640 543692 - Bilateria Bilateria No 1 1
Cel-Mir-96-P3 cel-mir-228 MIR-96 AUGGCAC MIMAT0000283 MIMAT0020327 chrIV 5562040 5562103 + Bilateria Bilateria No
Cbr-Mir-96-P3 cbr-mir-228 MIR-96 AUGGCAC MIMAT0000495 None IV 6041106 6041167 + Bilateria Bilateria No
Bpl-Mir-96-P3 None MIR-96 AUGGCAC None None QEOQ01000331.1 32991 33061 + Bilateria Bilateria Unknown 1
Bla-Mir-96-P3 None MIR-96 AUGGCAC None None Sc0000043 398484 398542 - Bilateria Bilateria No
Bko-Mir-96-P3 None MIR-96 AUGGCAC None None PJRA01000506.1 72757 72826 - Bilateria Bilateria Unknown
Bge-Mir-96-P3 None MIR-96 AUGGCAC None None KZ614838.1 267225 267283 - Bilateria Bilateria No 1
Bfl-Mir-96-P3 bfl-mir-183 MIR-96 AUGGCAC MIMAT0009487 None NC_049983.1 18504837 18504895 + Bilateria Bilateria No
Asu-Mir-96-P3 asu-mir-228 MIR-96 AUGGCAC MIMAT0021503 MIMAT0021504 Scaffold583 166177 166237 - Bilateria Bilateria No
Agr-Mir-96-P3 None MIR-96 AUGGCAC None None JABBOT010000004.1 30803502 30803560 + Bilateria Bilateria No
Aga-Mir-96-P3 aga-mir-263a MIR-96 AUGGCAC MIMAT0001507 None NC_064602.1 12213337 12213399 + Bilateria Bilateria No 1
Aae-Mir-96-P3 aae-mir-263a MIR-96 AUGGCAC MIMAT0014289 MIMAT0015372 supercont1.981 164960 165021 - Bilateria Bilateria No 1
Ava-Mir-96-o2 None MIR-96 AUGGCAC None None CP075492.1 10878858 10878918 + A. vaga Bilateria No 1
Ava-Mir-96-o1 None MIR-96 AUGGCAC None None CP075497.1 4909602 4909660 + A. vaga Bilateria No 1

(red - mature/co-mature, blue - star)

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