MirGeneDB ID | Cel-Mir-193-P1 |
Family name |
MIR-193 (all species) |
Species |
Roundworm (Caenorhabditis elegans) |
MiRBase ID |
cel-mir-240
|
Paralogues |
Cel-Mir-193-P1-v1
Cel-Mir-193-P2-v1
|
Orthologues |
Aae-Mir-193-P1
Aca-Mir-193-P1b
Aga-Mir-193-P1
Agr-Mir-193-P1l
Agr-Mir-193-P1m
Ami-Mir-193-P1a
Ami-Mir-193-P1b
Bfl-Mir-193-P1e
Bfl-Mir-193-P1j
Bfl-Mir-193-P1k
Bfl-Mir-193-P1o1a
Bfl-Mir-193-P1o1b
Bfl-Mir-193-P1o2
Bge-Mir-193-P1
Bla-Mir-193-P1e
Bla-Mir-193-P1f1
Bla-Mir-193-P1f2
Bla-Mir-193-P1g1
Bla-Mir-193-P1g2
Bla-Mir-193-P1h1
Bla-Mir-193-P1h2
Bla-Mir-193-P1i1
Bla-Mir-193-P1i2
Bla-Mir-193-P1j1
Bla-Mir-193-P1j2
Bla-Mir-193-P1k
Bta-Mir-193-P1a
Bta-Mir-193-P1b
Cbr-Mir-193-P1-v1
Cfa-Mir-193-P1a
Cfa-Mir-193-P1b
Cja-Mir-193-P1a
Cja-Mir-193-P1b
Cli-Mir-193-P1a
Cmi-Mir-193-P1a
Cmi-Mir-193-P1b
Cpi-Mir-193-P1a
Cpi-Mir-193-P1b
Cpo-Mir-193-P1a
Cpo-Mir-193-P1b
Csc-Mir-193-P1u
Cte-Mir-193-P1
Dan-Mir-193-P1-v1
Dgr-Mir-193-P1
Dlo-Mir-193-P1
Dma-Mir-193-P1
Dme-Mir-193-P1-v1
Dmo-Mir-193-P1-v1
Dno-Mir-193-P1a
Dno-Mir-193-P1b
Dpu-Mir-193-P1
Dre-Mir-193-P1a
Dre-Mir-193-P1b1
Dre-Mir-193-P1b2
Dsi-Mir-193-P1-v1
Dya-Mir-193-P1-v1
Eba-Mir-193-P1
Eca-Mir-193-P1a
Eca-Mir-193-P1b
Efe-Mir-193-P1n
Efe-Mir-193-P1o
Esc-Mir-193-P1
Ete-Mir-193-P1a
Ete-Mir-193-P1b
Gga-Mir-193-P1a
Gga-Mir-193-P1b
Gja-Mir-193-P1b
Gmo-Mir-193-P1b2
Gpa-Mir-193-P1
Hme-Mir-193-P1
Hru-Mir-193-P1
Hsa-Mir-193-P1a
Hsa-Mir-193-P1b
Isc-Mir-193-P1
Laf-Mir-193-P1a
Laf-Mir-193-P1b
Lan-Mir-193-P1p
Lan-Mir-193-P1q
Lch-Mir-193-P1a
Lch-Mir-193-P1b
Lgi-Mir-193-P1
Lhy-Mir-193-P1
Loc-Mir-193-P1a
Loc-Mir-193-P1b
Loc-Mir-193-P1b-as
Lpo-Mir-193-P1r
Lpo-Mir-193-P1s
Lpo-Mir-193-P1t
Mal-Mir-193-P1b2
Mdo-Mir-193-P1a
Mdo-Mir-193-P1b
Mgi-Mir-193-P1
Mml-Mir-193-P1a
Mml-Mir-193-P1b
Mmr-Mir-193-P1a
Mmr-Mir-193-P1b
Mmu-Mir-193-P1a
Mmu-Mir-193-P1b
Mom-Mir-193-P1
Mun-Mir-193-P1a
Mun-Mir-193-P1b
Neu-Mir-193-P1b
Npo-Mir-193-P1
Oan-Mir-193-P1a
Oan-Mir-193-P1b
Obi-Mir-193-P1
Ocu-Mir-193-P1a
Ocu-Mir-193-P1b
Ofu-Mir-193-P1
Ovu-Mir-193-P1
Pab-Mir-193-P1a
Pab-Mir-193-P1b
Pau-Mir-193-P1
Pbv-Mir-193-P1a
Pbv-Mir-193-P1b
Pcr-Mir-193-P1
Pfl-Mir-193-P1c
Pfl-Mir-193-P1d
Pma-Mir-193-P1
Pmi-Mir-193-P1
Pve-Mir-193-P1
Rno-Mir-193-P1a
Rno-Mir-193-P1b
Rph-Mir-193-P1
Sha-Mir-193-P1a
Sha-Mir-193-P1b
Sko-Mir-193-P1c
Sko-Mir-193-P1d
Snu-Mir-193-P1
Spt-Mir-193-P1a
Spt-Mir-193-P1b
Sto-Mir-193-P1a
Sto-Mir-193-P1b
Tca-Mir-193-P1
Tgu-Mir-193-P1a
Tgu-Mir-193-P1b
Tni-Mir-193-P1b2
War-Mir-193-P1
Xbo-Mir-193-P1
Xla-Mir-193-P1a3
Xla-Mir-193-P1a4
Xtr-Mir-193-P1a
|
Node of Origin (locus) |
Bilateria
|
Node of Origin (family) |
Bilateria
|
Genome context (ce11) |
chrX: 7882643-7882703 [+]
UCSC
Ensembl
|
Clustered miRNAs (< 50kb from Mir-193-P1-v2) |
Mir-193-P1-v1
chrX: 7882643-7882703 [+]
UCSC
Ensembl
Mir-193-P1-v2
chrX: 7882643-7882703 [+]
UCSC
Ensembl
Mir-193-P2-v1
chrX: 7882766-7882826 [+]
UCSC
Ensembl
Mir-193-P2-v2
chrX: 7882766-7882826 [+]
UCSC
Ensembl
|
Variant | Cel-Mir-193-P1-v2 |
Seed |
ACUGGCC |
Precursor (pre-Mir +30nt flank) |
GCUAUUUCGUUGUUAGAAACUUUUUCAAAUCGAGGAUUUUGAGACUAGAAUGCUUGAAUUGUACUAGCAUACUGGCCCCCAAAUCUUCGCUUAGAAAUACAGUUCACAAUUAUUUUAAUGG
Get precursor sequence
|
Structure | 10 20 30 40 50
GCUAUUUCGUUGUUAGAAACUU--| A U UGAGA A CUUGAAU
UUUC AA CGAGGAUUU CUAG AUG \
AAAG UU GCUUCUAAA GGUC UAC U
GGUAAUUUUAUUAACACUUGACAU^ A C CCCCC A GAUCAUG
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Cel-Mir-193-P1-v2_5p* |
mirBase accession | MIMAT0015116 |
Sequence |
0- CGAGGAUUUUGAGACUAGAAUG -22
Get sequence
|
Proposed targets |
microrna.org: MIMAT0015116
|
Mature sequence |
Cel-Mir-193-P1-v2_3p |
mirBase accession | MIMAT0000296 |
Sequence |
39- UACUGGCCCCCAAAUCUUCGCU -61
Get sequence
|
Proposed targets |
microrna.org: MIMAT0000296
TargetScanWorm: cel-miR-240
|
Variant | Cel-Mir-193-P1-v1 |
Seed |
UACUGGC |
Precursor (pre-Mir +30nt flank) |
GCUAUUUCGUUGUUAGAAACUUUUUCAAAUCGAGGAUUUUGAGACUAGAAUGCUUGAAUUGUACUAGCAUACUGGCCCCCAAAUCUUCGCUUAGAAAUACAGUUCACAAUUAUUUUAAUGG
Get precursor sequence
|
Structure | 10 20 30 40 50
GCUAUUUCGUUGUUAGAAACUU--| A U UGAGA A UUGAAU
UUUC AA CGAGGAUUU CUAG AUGC \
AAAG UU GCUUCUAAA GGUC UACG U
GGUAAUUUUAUUAACACUUGACAU^ A C CCCCC A AUCAUG
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Cel-Mir-193-P1-v1_5p* |
mirBase accession | MIMAT0015116 |
Sequence |
0- CGAGGAUUUUGAGACUAGAAUGC -23
Get sequence
|
Proposed targets |
microrna.org: MIMAT0015116
|
Mature sequence |
Cel-Mir-193-P1-v1_3p |
mirBase accession | MIMAT0000296 |
Sequence |
38- AUACUGGCCCCCAAAUCUUCGCU -61
Get sequence
|
Proposed targets |
microrna.org: MIMAT0000296
TargetScanWorm: cel-miR-240
|