MirGeneDB 3.0
58 Strongylocentrotus purpuratus microRNA genes
Sort by genome coordinates Motifs Tissue expression
- +
MirGeneDB ID ▲ MiRBase ID Family Seed 5p accession 3p accession Chromosome Start End Strand Node of origin (locus) Node of origin (family) Iso­miR 3' NTU  UG  UGUG CNNC 32 Bl Eg Ga Ov Pl To To
Spu-Let-7 spu-let-7 LET-7 GAGGUAG MIMAT0009649 None AAGJ06000001.1 27043769 27043836 + Bilateria Bilateria Unknown 1
Spu-Mir-1 spu-mir-1 MIR-1 GGAAUGU None MIMAT0009650 AAGJ06000013.1 7279918 7279981 + Bilateria Bilateria No 1
Spu-Mir-7 spu-mir-7 MIR-7 GGAAGAC MIMAT0009651 None AAGJ06000009.1 11221 11286 - Bilateria Bilateria No 1 1
Spu-Mir-8 spu-mir-200 MIR-8 AAUACUG MIMAT0013801 MIMAT0009652 AAGJ06000016.1 26494529 26494591 - Nephrozoa Nephrozoa No 1
Spu-Mir-9 spu-mir-9 MIR-9 CUUUGGU MIMAT0009653 MIMAT0009661 AAGJ06000009.1 10964608 10964669 + Bilateria Bilateria No 1 1
Spu-Mir-10-P1 spu-mir-10 MIR-10 ACCCUGU MIMAT0009654 None AAGJ06000006.1 38277848 38277918 + Bilateria Eumetazoa No 1
Spu-Mir-10-P2m spu-mir-2003 MIR-10 ACCCGUA MIMAT0009744 MIMAT0019166 AAGJ06000001.1 27024190 27024252 + S. purpuratus Eumetazoa No 1 1
Spu-Mir-10-P2n None MIR-10 ACCCGUA None None AAGJ06000001.1 27027636 27027697 + S. purpuratus Eumetazoa Unknown 1
Spu-Mir-10-P3 spu-mir-125 MIR-10 CCCUGAG MIMAT0009667 MIMAT0019161 AAGJ06000001.1 27044734 27044796 + Bilateria Eumetazoa No 1 1
Spu-Mir-22-P2 None MIR-22 CAGCUGC None None AAGJ06000817.1 381359 381427 + Bilateria Bilateria No 1 1
Spu-Mir-29-P1 spu-mir-29a MIR-29 AGCACCA None MIMAT0009656 AAGJ06000828.1 34320 34384 + Bilateria Bilateria No 1 1
Spu-Mir-29-P2 spu-mir-29b MIR-29 AGCACCA None MIMAT0020067 AAGJ06000006.1 22300868 22300931 + Bilateria Bilateria No 1 1
Spu-Mir-31 spu-mir-31 MIR-31 GGCAAGA MIMAT0009657 None AAGJ06000854.1 419468 419530 + Bilateria Bilateria No 1
Spu-Mir-33 spu-mir-33 MIR-33 UGCAUUG MIMAT0009658 None AAGJ06000011.1 28175102 28175163 + Bilateria Bilateria No 1 1
Spu-Mir-34 spu-mir-34 MIR-34 GGCAGUG MIMAT0009659 None AAGJ06000001.1 43627763 43627823 - Bilateria Bilateria No 1 1
Spu-Mir-71 spu-mir-71 MIR-71 GAAAGAC MIMAT0009660 None AAGJ06000008.1 10606961 10607022 + Nephrozoa Nephrozoa No 1
Spu-Mir-76 spu-mir-981 MIR-76 UCGUUGU None MIMAT0020068 AAGJ06000011.1 20172220 20172283 + Nephrozoa Nephrozoa Unknown
Spu-Mir-92-o13 None MIR-92 AUUGCAC None None AAGJ06000006.1 26954701 26954769 - S. purpuratus Bilateria No 1 1 1
Spu-Mir-92-o14 spu-mir-92b MIR-92 AUUGCAC MIMAT0019160 MIMAT0009663 AAGJ06000006.1 26946651 26946718 - S. purpuratus Bilateria No 1
Spu-Mir-92-o15 spu-mir-92c MIR-92 AUUGCAC None MIMAT0009664 AAGJ06000006.1 26944977 26945042 - S. purpuratus Bilateria No
Spu-Mir-92-o16 spu-mir-92a MIR-92 AUUGCAC None MIMAT0009662 AAGJ06000006.1 26944529 26944593 - S. purpuratus Bilateria No 1
Spu-Mir-92-o17 None MIR-92 AUUGCAC None None AAGJ06000006.1 26943673 26943760 - S. purpuratus Bilateria No 1
Spu-Mir-92-o18 None MIR-92 AUUGCAC None None AAGJ06000006.1 15043892 15043954 - S. purpuratus Bilateria No 1 1
Spu-Mir-92-o19 None MIR-92 AUUGCAC None None AAGJ06000006.1 15043364 15043426 - S. purpuratus Bilateria No 1
Spu-Mir-92-o20 None MIR-92 AUUGCAC None None AAGJ06000006.1 15042909 15042971 - S. purpuratus Bilateria No 1 1 1
Spu-Mir-96-P1 spu-mir-96 MIR-96 UUGGCAC MIMAT0009665 None AAGJ06000857.1 2626661 2626734 + Bilateria Bilateria No 1 1
Spu-Mir-96-P2 spu-mir-182 MIR-96 UUGGCAA MIMAT0009670 None AAGJ06000006.1 25941362 25941428 + Bilateria Bilateria No
Spu-Mir-96-P3 spu-mir-183 MIR-96 AUGGCAC MIMAT0009684 None AAGJ06000857.1 2625088 2625155 + Bilateria Bilateria No 1
Spu-Mir-103 spu-mir-2013 MIR-103 GCAGCAU None MIMAT0009742 AAGJ06000817.1 383311 383375 + Bilateria Bilateria No 1 1 1
Spu-Mir-124 spu-mir-124 MIR-124 AAGGCAC None MIMAT0009666 AAGJ06000013.1 11029956 11030016 - Bilateria Bilateria No
Spu-Mir-133 spu-mir-133 MIR-133 UUGGUCC None MIMAT0009668 AAGJ06000013.1 7381050 7381111 + Bilateria Bilateria No 1 1
Spu-Mir-137 spu-mir-137 MIR-137 UAUUGCU None MIMAT0009645 AAGJ06000003.1 21105352 21105409 + Bilateria Bilateria No 1
Spu-Mir-153 spu-mir-153 MIR-153 UGCAUAG MIMAT0019162 MIMAT0009669 AAGJ06000019.1 10025885 10025953 - Bilateria Bilateria No
Spu-Mir-184 spu-mir-184 MIR-184 GGACGGA None MIMAT0009671 AAGJ06000835.1 622355 622424 + Nephrozoa Nephrozoa No 1 1
Spu-Mir-193-P2 None MIR-193 AAUGCCC None None AAGJ06000014.1 16475259 16475346 + Bilateria Bilateria No 1
Spu-Mir-210 V spu-mir-210 MIR-210 UGUGCGU None MIMAT0009646 AAGJ06000018.1 27105558 27105624 + Bilateria Bilateria 2 No 1
Spu-Mir-219 spu-mir-219 MIR-219 GAUUGUC MIMAT0009685 MIMAT0022953 AAGJ06000004.1 25977850 25977910 - Bilateria Bilateria No 1
Spu-Mir-242 spu-mir-242 MIR-242 UGCGUAG MIMAT0009647 None AAGJ06000857.1 1093867 1093927 - Nephrozoa Nephrozoa No
Spu-Mir-252-P1 spu-mir-252b MIR-252 UAAGUAG MIMAT0009673 None AAGJ06000015.1 475408 475467 + Bilateria Bilateria No
Spu-Mir-252-P2 spu-mir-252a MIR-252 UAAGUAC MIMAT0009672 None AAGJ06000015.1 476786 476869 + Bilateria Bilateria No 1
Spu-Mir-278 spu-mir-278 MIR-278 CGGUGGG MIMAT0019163 MIMAT0009674 AAGJ06000002.1 25922652 25922716 - Bilateria Bilateria No 1
Spu-Mir-375 spu-mir-375 MIR-375 UUGUUCG None MIMAT0009648 AAGJ06000019.1 21884819 21884903 + Nephrozoa Nephrozoa No 1
Spu-Mir-2001 spu-mir-2001 MIR-2001 UGUGACC MIMAT0009740 None AAGJ06000015.1 468208 468268 + Bilateria Bilateria No 1
Spu-Mir-2002 spu-mir-2002 MIR-2002 GAAUACA MIMAT0019165 MIMAT0009743 AAGJ06000001.1 43632827 43632891 - Eleutherozoa Eleutherozoa No 1 1
Spu-Mir-2004 spu-mir-2004 MIR-2004 CACACAC None MIMAT0009745 AAGJ06000009.1 7155334 7155398 - Eleutherozoa Eleutherozoa No 1 1
Spu-Mir-2005 spu-mir-2005 MIR-2005 GUCCAAU MIMAT0009746 None AAGJ06000820.1 1476067 1476130 - Eleutherozoa Eleutherozoa Unknown 1
Spu-Mir-2006 spu-mir-2006 MIR-2006 AGCACAC None MIMAT0009747 AAGJ06000002.1 37442211 37442279 - Ambulacraria Ambulacraria Yes 1
Spu-Mir-2007 spu-mir-2007 MIR-2007 AUUUCAG MIMAT0009748 None AAGJ06000006.1 42333222 42333290 + Ambulacraria Ambulacraria No
Spu-Mir-2008 spu-mir-2008 MIR-2008 UAUUAAC None MIMAT0009749 AAGJ06000010.1 6802287 6802345 - Ambulacraria Ambulacraria No 1
Spu-Mir-2009 spu-mir-2009 MIR-2009 GAGUUGU None MIMAT0009750 AAGJ06000835.1 1151464 1151524 - Ambulacraria Ambulacraria No
Spu-Mir-2010 spu-mir-2010 MIR-2010 UACUGUU None MIMAT0009751 AAGJ06000012.1 33083243 33083307 - Eleutherozoa Eleutherozoa No 1 1 1
Spu-Mir-2011 spu-mir-2011 MIR-2011 CAAGGUG None MIMAT0009752 AAGJ06000016.1 28635498 28635558 + Ambulacraria Ambulacraria No 1
Spu-Mir-2012 spu-mir-2012 MIR-2012 AGUACUG MIMAT0009741 None AAGJ06000018.1 2474077 2474140 - Ambulacraria Ambulacraria No 1
Spu-Mir-4847 spu-mir-4847 MIR-4847 AAUGAUG MIMAT0020069 None AAGJ06000004.1 4948627 4948690 - S. purpuratus S. purpuratus Unknown 1
Spu-Novel-1-P1a None SPU-NOVEL-1 UUUAUGA None None AAGJ06000868.1 418239 418302 - S. purpuratus S. purpuratus No 1
Spu-Novel-1-P1b None SPU-NOVEL-1 UUUAUGA None None AAGJ06000004.1 20054437 20054500 + S. purpuratus S. purpuratus No 1
Spu-Novel-2-P1a None SPU-NOVEL-2 AUAUGAU None None AAGJ06000868.1 421541 421599 - S. purpuratus S. purpuratus No 1
Spu-Novel-2-P1b None SPU-NOVEL-2 AUAUGAU None None AAGJ06000004.1 20050681 20050739 + S. purpuratus S. purpuratus No 1

(red - mature/co-mature, blue - star)

Download sequences for: precursor | 5p | 3p | mature | star | mature/star | loop | extend_pre | all

Download genome coordinates (GFF format)

Download count matrix