| MirGeneDB ID | Spu-Mir-4847 |
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| Family name |
MIR-4847 (all species) |
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| Species |
Purple sea urchin (Strongylocentrotus purpuratus) |
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| MiRBase ID |
spu-mir-4847
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
S. purpuratus
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| Node of Origin (family) |
S. purpuratus
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Genome context
(Spur_5.0) |
AAGJ06000004.1: 4948627-4948690 [-]
Ensembl
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| Seed |
AAUGAUG |
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Precursor
(pre-Mir +30nt flank) |
GGAGGAGAUGGCGCACAUACUCUCACCUCAUAAUGAUGGCGCGGUGCGGUGCGAUGUGAUAUCAAAAAAUUCGCUCUCAUUCGCCAUCAUUCUUAGGUGUAGUUAGCUCAGCCAUGCAAUUCAC
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
GGAGGAGAUGGCGCACAU---| CU CAU C C U UGUGAUA
ACU CACCU AAUGAUGGCG GGUG GG GCGA U
UGA GUGGA UUACUACCGC UUAC UC CGCU C
CACUUAACGUACCGACUCGAU^ U- UUC - - U UAAAAAA
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| Comment | Although there is no star recorded for Mir-4847 expression of the 5p arm is deeply conserved across echinoid echinoderms. |
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| 3' NTU |
Unknown
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| Motifs | UGUG in loop |
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Tissue expression
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| Mature sequence |
Spu-Mir-4847_5p |
| mirBase accession | MIMAT0020069 |
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| Sequence |
0- UAAUGAUGGCGCGGUGCGGUGCGA -24
Get sequence
|
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| Star sequence |
Spu-Mir-4847_3p* (predicted) |
| mirBase accession | None |
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| Sequence |
42- GCUCUCAUUCGCCAUCAUUCUU -64
Get sequence
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