MirGeneDB 2.1

MirGeneDB ID

Spu-Mir-92-o20

Family name MIR-92 (all species)
Seed AUUGCAC
Species Purple sea urchin (Strongylocentrotus purpuratus)
MiRBase ID
Paralogues Spu-Mir-92-o13  Spu-Mir-92-o14  Spu-Mir-92-o15  Spu-Mir-92-o16  Spu-Mir-92-o17  Spu-Mir-92-o18  Spu-Mir-92-o19 
Orthologues Asu-Mir-92  Cel-Mir-92  Esc-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) S. purpuratus
Node of Origin (family) Bilateria
Genome context
(Spur_5.0)
AAGJ06000006.1: 15042909-15042971 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AUAGUGGUCUCCAAUUUGGCUGUUUUUGACAGGGCGAGGCUUGUGUAAUCCUGUGUUUAUUGAAUGGCCAGUAUUGCACUCCCCCCGGCCUUUGAAUGACAGCUACCUACAUCAAGCAUCAUC
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Structure
        10          20         30        40        50        60 
AUAGUGGUCUCCAAUUU--       -| UG C   G  A  CUU       C  GUGUUUAU 
                   GGCUGUU UU  A AGG CG GG   GUGUAAU CU        \
                   UCGACAG AA  U UCC GC CC   CACGUUA GA        U
CUACUACGAACUACAUCCA       U^ GU -   G  C  CCU       U  CCGGUAAG 
 120       110       100         90        80        70
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
 +
32 Bl Eg Ga Ov Pl To To
Star sequence

Spu-Mir-92-o20_5p*

mirBase accessionNone
Sequence
0- AGGGCGAGGCUUGUGUAAUCCU -22
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Mature sequence

Spu-Mir-92-o20_3p

mirBase accessionNone
Sequence
41- UAUUGCACUCCCCCCGGCCUUU -63
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