| MirGeneDB ID | Spu-Mir-2010 |
|---|
| Family name |
MIR-2010 (all species) |
|---|
| Seed |
UACUGUU |
|---|
| Species |
Purple sea urchin (Strongylocentrotus purpuratus) |
|---|
| MiRBase ID |
spu-mir-2010
|
|---|
| Paralogues |
|
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| Orthologues |
Pmi-Mir-2010
|
|---|
| Node of Origin (locus) |
Eleutherozoa
|
|---|
| Node of Origin (family) |
Eleutherozoa
|
|---|
Genome context
(Spur_5.0) |
AAGJ06000012.1: 33083243-33083307 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GUCUUCCAUGCUCUCAUGGUACGCCAGCAAGGGCUGGUUUCUCCAGUAAUUUGUAUCUUCAUUAUAGCAUCAAUUACUGUUGAUGUCAGCCCCUUGCUGGUAUACUGCCCUCUACAAUCCUGAUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GUCUUCCAUGCUCUCAU-- CG -| UU UC UGUAUCUUC
GGUA CCAGCAA GGGCUGG UC CAGUAAUU A
UCAU GGUCGUU CCCGACU AG GUCAUUAA U
GUAGUCCUAACAUCUCCCG AU C^ GU UU CUACGAUAU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | Not in assembly but in trace archive. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Spu-Mir-2010_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- GGGCUGGUUUCUCCAGUAAUU -21
Get sequence
|
|---|
| Mature sequence |
Spu-Mir-2010_3p |
| mirBase accession | MIMAT0009751 |
|---|
| Sequence |
43- UUACUGUUGAUGUCAGCCCCUU -65
Get sequence
|
|---|
