| MirGeneDB ID | Spu-Mir-2006 |
|---|
| Family name |
MIR-2006 (all species) |
|---|
| Species |
Purple sea urchin (Strongylocentrotus purpuratus) |
|---|
| MiRBase ID |
spu-mir-2006
|
|---|
| Paralogues |
|
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| Orthologues |
Pfl-Mir-2006
Pmi-Mir-2006
Sko-Mir-2006
|
|---|
| Node of Origin (locus) |
Ambulacraria
|
|---|
| Node of Origin (family) |
Ambulacraria
|
|---|
Genome context
(Spur_5.0) |
AAGJ06000002.1: 37442211-37442279 [-]
Ensembl
|
|---|
| Seed |
AGCACAC |
|---|
Precursor
(pre-Mir +30nt flank) |
AUACUUCAUCCUCAAGGCCGUAGCAUGUGCCAUCGCCACCAAGUGUACUUCAGUGGACAUAUGUCGUUUUUAAAUCUGAGCACACUUGGUAGCGGUGCCGUGAGCUACUCCCAUACAUCGGACCAUGCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AUACUUCAUCCUCAAGGCC--| A GU C C A U UGGACAUAUG
GUAGC U G CAUCGC ACCAAGUGU CU CAG U
CAUCG G C GUGGCG UGGUUCACA GA GUC C
ACGUACCAGGCUACAUACCCU^ A UG C A C - UAAAUUUUUG
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Yes
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
|---|
| Star sequence |
Spu-Mir-2006_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CAUCGCCACCAAGUGUACUUCAG -23
Get sequence
|
|---|
| Mature sequence |
Spu-Mir-2006_3p |
| mirBase accession | MIMAT0009747 |
|---|
| Sequence |
47- GAGCACACUUGGUAGCGGUGCC -69
Get sequence
|
|---|
