| MirGeneDB ID | Spu-Mir-2004 |
|---|
| Family name |
MIR-2004 (all species) |
|---|
| Species |
Purple sea urchin (Strongylocentrotus purpuratus) |
|---|
| MiRBase ID |
spu-mir-2004
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Pmi-Mir-2004
|
|---|
| Node of Origin (locus) |
Eleutherozoa
|
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| Node of Origin (family) |
Eleutherozoa
|
|---|
Genome context
(Spur_5.0) |
AAGJ06000009.1: 7155334-7155398 [-]
Ensembl
|
|---|
| Seed |
CACACAC |
|---|
Precursor
(pre-Mir +30nt flank) |
UUAGAUAGAGAAGAGAGGCUACUUGCGGACCUUUCUGUGGCUGUCGUGUUAAGUGUGAUUCUAUGAAGACACUUCACACACAACCACAGGAAGUUUUGCACGGUAGCCAUGACAACGCAUCCGGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UUAGAUAGAGAAGAGAG- -| C C C U UGUGAUUC
GCUACU UGCGGA CUUUCUGUGG UGU GUGU AAG U
CGAUGG ACGUUU GAAGGACACC ACA CACA UUC A
AGGCCUACGCAACAGUAC C^ U A - C ACAGAAGU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17), UGUG in loop |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Spu-Mir-2004_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- CUUUCUGUGGCUGUCGUGUUAAG -23
Get sequence
|
|---|
| Mature sequence |
Spu-Mir-2004_3p |
| mirBase accession | MIMAT0009745 |
|---|
| Sequence |
43- UCACACACAACCACAGGAAGUU -65
Get sequence
|
|---|
