MirGeneDB 2.1

MirGeneDB ID

Pmi-Mir-2004

Family name MIR-2004 (all species)
Seed CACACAC
Species Bat starfish (Patiria miniata)
MiRBase ID pmi-mir-2004
Paralogues
Orthologues Spu-Mir-2004 
Node of Origin (locus) Eleutherozoa
Node of Origin (family) Eleutherozoa
Genome context
(Pmin1)
JH775453.1: 21223-21282 [+]
Precursor
(pre-Mir +30nt flank)
UUGCUGUAAGAUAAAUGUCUUGGCCCCAGUCUUUCUGUGGUCGUCGUGUAAGGCUGAAUGCAGUAUCCUCACACACAACCACAGGAAGUUUGGUGUCUCAAGUCAUAGCAUCAUCAUGGU
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Structure
        10        20          30        40        50          
UUGCUGUAAGAUAAAUGUCUU--|  C    U           C  C    A   CUGAAU 
                       GGC CCAG CUUUCUGUGGU GU GUGU AGG      \
                       CUG GGUU GAAGGACACCA CA CACA UCC      G
UGGUACUACUACGAUACUGAACU^  U    U           A  -    C   UAUGAC 
.       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Em To
Star sequence

Pmi-Mir-2004_5p*

mirBase accessionNone
Sequence
0- CUUUCUGUGGUCGUCGUGUAAGG -23
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Mature sequence

Pmi-Mir-2004_3p

mirBase accessionMIMAT0032177
Sequence
38- UCACACACAACCACAGGAAGUU -60
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