MirGeneDB 3.0
62 Ixodes scapularis microRNA genes
Sort by genome coordinates Motifs Tissue expression
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MirGeneDB ID ▲ MiRBase ID Family Seed 5p accession 3p accession Chromosome Start End Strand Node of origin (locus) Node of origin (family) Iso­miR 3' NTU  UG  UGUG CNNC Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Sa Sa To
Isc-Bantam-P9a isc-bantam BANTAM GAGAUCA None MIMAT0012679 NW_024609881.1 54625045 54625105 + I. scapularis Protostomia No
Isc-Bantam-P9b isc-bantam BANTAM GAGAUCA None MIMAT0012679 NW_024609881.1 54625045 54625105 + I. scapularis Protostomia No
Isc-Iab-4 isc-mir-iab-4 IAB-4 CGUAUAC MIMAT0018921 None NW_024609835.1 45790818 45790875 - Arthropoda Arthropoda Unknown 1
Isc-Let-7 isc-let-7 LET-7 GAGGUAG MIMAT0012680 None NW_024609835.1 81482521 81482592 + Bilateria Bilateria No 1
Isc-Mir-1 isc-mir-1 MIR-1 GGAAUGU None MIMAT0012681 NW_024609883.1 32135819 32135882 + Bilateria Bilateria No 1 1
Isc-Mir-2-P1 isc-mir-2b MIR-2 AUCACAG None MIMAT0012697 NW_024609884.1 3130345 3130409 + Arthropoda Protostomia No 1
Isc-Mir-2-P3 None MIR-2 CAUCAAA None None NW_024609884.1 3130575 3130635 + Arthropoda Protostomia No 1
Isc-Mir-2-P4 isc-mir-2a MIR-2 AUCACAG None MIMAT0012696 NW_024609884.1 3130738 3130797 + Arthropoda Protostomia No 1 1
Isc-Mir-7 isc-mir-7 MIR-7 GGAAGAC MIMAT0012702 None NW_024609837.1 86510891 86510951 + Bilateria Bilateria No
Isc-Mir-8 isc-mir-8 MIR-8 AAUACUG None MIMAT0012706 NW_024609846.1 79744151 79744209 - Nephrozoa Nephrozoa No
Isc-Mir-9 isc-mir-79 MIR-9 CUUUGGU None MIMAT0012705 NW_024609837.1 34341070 34341129 + Bilateria Bilateria No 1 1
Isc-Mir-10-P1 V isc-mir-10 MIR-10 CCCUGUA MIMAT0012682 None NW_024609835.1 47870436 47870493 + Bilateria Eumetazoa 2 No 1
Isc-Mir-10-P2 isc-mir-100 MIR-10 ACCCGUA MIMAT0012683 None NW_024609835.1 81421653 81421714 + Bilateria Eumetazoa No
Isc-Mir-10-P3 None MIR-10 CCCUGAG None None NW_024609835.1 81498104 81498166 + Bilateria Eumetazoa No
Isc-Mir-10-P4 isc-mir-993 MIR-10 AAGCUCG None MIMAT0012709 NW_024609835.1 48437536 48437601 - Protostomia Eumetazoa No 1
Isc-Mir-12 isc-mir-12 MIR-12 GAGUAUU MIMAT0012684 None NW_024609836.1 71440117 71440176 + Protostomia Protostomia No 1
Isc-Mir-22-P2 None MIR-22 AGCUGCC None None NW_024609846.1 68352105 68352165 + Bilateria Bilateria No 1
Isc-Mir-29-P1 isc-mir-285 MIR-29 AGCACCA None MIMAT0012695 NW_024609883.1 109400974 109401034 + Bilateria Bilateria No 1
Isc-Mir-31 None MIR-31 GGCAAGA None None NW_024609838.1 88059419 88059480 + Bilateria Bilateria Unknown 1 1
Isc-Mir-33 None MIR-33 AGUGCUU None None NW_024609839.1 30890464 30890527 - Bilateria Bilateria No 1
Isc-Mir-34 None MIR-34 GGCAGUG None None NW_024609835.1 44952210 44952269 - Bilateria Bilateria No 1 1
Isc-Mir-36 None MIR-36 GGUGAAU None None NW_024609882.1 21277571 21277632 + Protostomia Protostomia Unknown 1 1
Isc-Mir-67 isc-mir-307 MIR-67 CUCACUC None MIMAT0012701 NW_024609846.1 209993240 209993303 - Protostomia Protostomia No 1
Isc-Mir-71 isc-mir-71 MIR-71 GAAAGAC MIMAT0012703 None NW_024609884.1 3130205 3130267 + Nephrozoa Nephrozoa No
Isc-Mir-76 None MIR-76 UCGUUGU None None NW_024609839.1 80457596 80457676 - Nephrozoa Nephrozoa No
Isc-Mir-87-P1 None MIR-87 UGAGCAA None None NW_024609880.1 72740477 72740537 - Protostomia Protostomia No 1 1
Isc-Mir-87-P2 isc-mir-87 MIR-87 UGAGCAA None MIMAT0012707 NW_024609880.1 72740057 72740115 - Protostomia Protostomia No 1
Isc-Mir-92 None MIR-92 AUUGCAC None None NW_024609835.1 105204230 105204288 - Bilateria Bilateria No 1
Isc-Mir-96-P1 isc-mir-96 MIR-96 UUGGCAC MIMAT0012708 None NW_024609883.1 66568275 66568335 - Bilateria Bilateria No
Isc-Mir-96-P2 None MIR-96 UUGGCAC None None NW_024609883.1 66568667 66568731 - Bilateria Bilateria Unknown
Isc-Mir-96-P3 isc-mir-263a MIR-96 AUGGCAC MIMAT0012692 None NW_024609883.1 66587829 66587891 - Bilateria Bilateria No 1
Isc-Mir-124 isc-mir-124 MIR-124 GUAUUCA None MIMAT0012685 NW_024609883.1 45751387 45751446 - Bilateria Bilateria No 1 1
Isc-Mir-133 isc-mir-133 MIR-133 UGGUCCC None MIMAT0012686 NW_024609883.1 32312016 32312095 + Bilateria Bilateria No 1
Isc-Mir-137 isc-mir-137 MIR-137 UAUUGCU None MIMAT0012687 NW_024609838.1 2074356 2074416 + Bilateria Bilateria No 1
Isc-Mir-153 isc-mir-153 MIR-153 UGCAUAG None MIMAT0012688 NW_024609880.1 61630780 61630837 - Bilateria Bilateria No 1 1
Isc-Mir-184 isc-mir-184 MIR-184 GGACGGA None MIMAT0012689 NW_024609835.1 84028187 84028247 - Nephrozoa Nephrozoa No 1
Isc-Mir-190 None MIR-190 CCAGGAG None None NW_024609835.1 240376231 240376288 - Bilateria Bilateria No 1
Isc-Mir-193-P1 isc-mir-5309 MIR-193 AAUGCCC None MIMAT0021379 NW_024609881.1 79671618 79671682 - Bilateria Bilateria No 1
Isc-Mir-210 None MIR-210 AGUCGCU None None NW_024609882.1 91881187 91881247 + Bilateria Bilateria No 1
Isc-Mir-216-P2 isc-mir-5307 MIR-216 AAUCUCA MIMAT0021377 None NW_024609836.1 71439542 71439601 + Nephrozoa Nephrozoa Unknown
Isc-Mir-219 isc-mir-219 MIR-219 GAUUGUC MIMAT0012690 None NW_024609868.1 46492192 46492250 + Bilateria Bilateria No 1
Isc-Mir-252-P1 isc-mir-252b MIR-252 UAAGUAG MIMAT0012691 None NW_024609884.1 42599642 42599701 + Bilateria Bilateria No 1
Isc-Mir-252-P2 V None MIR-252 UAAGUAC None None NW_024609884.1 72491914 72491974 - Bilateria Bilateria 2 Unknown 1 1
Isc-Mir-275 isc-mir-275 MIR-275 CAGGUAC None MIMAT0012693 NW_024609835.1 9540839 9540901 - Arthropoda Arthropoda No
Isc-Mir-276 isc-mir-276 MIR-276 AGGAACU None MIMAT0018919 NW_024609884.1 299896 299956 - Arthropoda Arthropoda No 1
Isc-Mir-277 None MIR-277 AAAUGCA None None NW_024609835.1 44973543 44973605 - Protostomia Protostomia No 1
Isc-Mir-278 isc-mir-278 MIR-278 CGGAUGA None MIMAT0016930 NW_024609846.1 201524982 201525048 + Bilateria Bilateria No 1
Isc-Mir-279 isc-mir-279 MIR-279 GACUAGA None MIMAT0012694 NW_024609882.1 21276941 21276998 + Protostomia Protostomia No 1
Isc-Mir-281 None MIR-281 AGAGAGC None None NW_024609835.1 168853379 168853442 + Nephrozoa Nephrozoa No 1
Isc-Mir-305 isc-mir-305 MIR-305 UUGUACU MIMAT0018920 None NW_024609835.1 9524414 9524478 - Cryptovermes Cryptovermes No 1
Isc-Mir-315 isc-mir-315 MIR-315 UUUGAUU MIMAT0012698 None NW_024609883.1 67654346 67654405 + Nephrozoa Nephrozoa No 1
Isc-Mir-317 isc-mir-317 MIR-317 GAACACA None MIMAT0012699 NW_024609835.1 44980128 44980191 - Protostomia Protostomia No 1 1
Isc-Mir-375 isc-mir-375 MIR-375 UUGUUCG None MIMAT0012700 NW_024609880.1 65463799 65463859 - Nephrozoa Nephrozoa No 1
Isc-Mir-750 isc-mir-750 MIR-750 CAGAUCU None MIMAT0012704 NW_024609838.1 27830443 27830507 - Protostomia Protostomia No
Isc-Mir-1175 None MIR-1175 GAGAUUC None None NW_024609838.1 27829237 27829298 - Protostomia Protostomia No 1
Isc-Mir-1993 isc-mir-1993 MIR-1993 AUUAUGC None MIMAT0016929 NW_024609838.1 16707574 16707636 - Protostomia Protostomia No 1
Isc-Mir-2001 isc-mir-2001 MIR-2001 UGUGACC MIMAT0009721 None NW_024609884.1 42500086 42500147 + Bilateria Bilateria No 1
Isc-Mir-3931 isc-mir-3931 MIR-3931 ACUUUGA None MIMAT0021380 NW_024609868.1 81496405 81496463 - Chelicerata Chelicerata No 1 1
Isc-Mir-5305 isc-mir-5305 MIR-5305 GGGCUUG None MIMAT0021375 NW_024609838.1 87221059 87221118 + Chelicerata Chelicerata No
Isc-Mir-5308 isc-mir-5308 MIR-5308 CUGUGCU MIMAT0021378 None NW_024609835.1 64049689 64049747 + I. scapularis I. scapularis No 1
Isc-Mir-5315 isc-mir-5315 MIR-5315 ACACAAC MIMAT0021386 None NW_024609882.1 31125367 31125425 + I. scapularis I. scapularis No 1 1
Isc-Novel-1 None ISC-NOVEL-1 GUGGUCA None None NW_024609884.1 14998415 14998476 - I. scapularis I. scapularis Unknown 1 1

(red - mature/co-mature, blue - star)

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