MirGeneDB 3.0

MirGeneDB ID

Dma-Mir-153

Family name

MIR-153 (all species)

Species

Large common water flea (Daphnia magna)

MiRBase ID

Paralogues

Orthologues

Aca-Mir-153-P1 Aca-Mir-153-P2 Agr-Mir-153 Ami-Mir-153-P1 Ami-Mir-153-P2 Asu-Mir-153 Ava-Mir-153-P20 Ava-Mir-153-P21 Bfl-Mir-153 Bge-Mir-153-P16 Bge-Mir-153-P17 Bko-Mir-153 Bla-Mir-153 Bpl-Mir-153 Bta-Mir-153-P1 Bta-Mir-153-P2 Cfa-Mir-153-P1 Cfa-Mir-153-P2 Cin-Mir-153 Cja-Mir-153-P1 Cja-Mir-153-P2 Cli-Mir-153-P1 Cli-Mir-153-P2 Cmi-Mir-153-P1 Cmi-Mir-153-P2 Cmi-Mir-153-P4 Cpi-Mir-153-P1 Cpi-Mir-153-P2 Cpo-Mir-153-P1 Csc-Mir-153-P18 Csc-Mir-153-P19a-v1 Csc-Mir-153-P19b-v1 Cte-Mir-153 Dgr-Mir-153 Dno-Mir-153-P1 Dno-Mir-153-P2 Dpu-Mir-153 Dre-Mir-153-P1a Dre-Mir-153-P2a Dre-Mir-153-P2b Eba-Mir-153 Ebu-Mir-153-P5 Ebu-Mir-153-P6 Ebu-Mir-153-P7 Eca-Mir-153-P1 Eca-Mir-153-P2 Efe-Mir-153-P8 Efe-Mir-153-P9 Egr-Mir-153 Esc-Mir-153-P18a Esc-Mir-153-P18b Ete-Mir-153-P1 Gga-Mir-153-P1 Gga-Mir-153-P2 Gja-Mir-153-P1 Gja-Mir-153-P2 Gmo-Mir-153-P1a Gmo-Mir-153-P1b Gmo-Mir-153-P2a Gsa-Mir-153 Gsp-Mir-153 Hmi-Mir-153 Hru-Mir-153 Hsa-Mir-153-P1 Hsa-Mir-153-P2 Isc-Mir-153 Laf-Mir-153-P1 Laf-Mir-153-P2 Lan-Mir-153 Lch-Mir-153-P1 Lch-Mir-153-P2 Lgi-Mir-153 Llo-Mir-153 Loc-Mir-153-P1 Loc-Mir-153-P2 Lpo-Mir-153-P10 Lpo-Mir-153-P11 Lpo-Mir-153-P12 Lpo-Mir-153-P13 Lpo-Mir-153-P14 Lpo-Mir-153-P15 Mal-Mir-153-P1a Mal-Mir-153-P1b Mal-Mir-153-P2a Mal-Mir-153-P2b Mdo-Mir-153-P1 Mdo-Mir-153-P2 Mgi-Mir-153 Mml-Mir-153-P1 Mml-Mir-153-P2 Mmr-Mir-153-P1 Mmr-Mir-153-P2 Mmu-Mir-153-P1 Mom-Mir-153 Mun-Mir-153-P1 Mun-Mir-153-P2 Neu-Mir-153-P2 Npo-Mir-153 Oan-Mir-153-P1 Oan-Mir-153-P2 Obi-Mir-153 Ocu-Mir-153-P1 Ofu-Mir-153 Ovu-Mir-153 Pab-Mir-153-P1 Pab-Mir-153-P2 Pau-Mir-153 Pbv-Mir-153-P1 Pbv-Mir-153-P2 Pca-Mir-153 Pcr-Mir-153 Pdu-Mir-153 Pfl-Mir-153 Pma-Mir-153-o1 Pma-Mir-153-o2 Pma-Mir-153-o3 Pmi-Mir-153 Pve-Mir-153 Rno-Mir-153-P1 Rph-Mir-153 Sha-Mir-153-P1 Sha-Mir-153-P2 Sko-Mir-153 Sme-Mir-153 Snu-Mir-153 Spt-Mir-153-P1 Spt-Mir-153-P2 Spu-Mir-153 Sto-Mir-153-P1 Sto-Mir-153-P2 Sto-Mir-153-P4 Tgu-Mir-153-P1 Tgu-Mir-153-P2 Tni-Mir-153-P1b Tni-Mir-153-P2a Tni-Mir-153-P2b Tur-Mir-153 War-Mir-153 Xbo-Mir-153 Xla-Mir-153-P1c Xla-Mir-153-P1d Xla-Mir-153-P2c Xla-Mir-153-P2d Xtr-Mir-153-P1 Xtr-Mir-153-P2

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(DMA_ASM399081)

NC_046175.1: 7410422-7410486 [+] Ensembl

Seed

Precursor
(pre-Mir +30nt flank)

AAACCCCCGAAACCGAUCUGUAACUCACCUCUCAUUUUCGUGAUUUUUGCAAUUUGAAUAAACAAUUGGAAAUUGCAUAGUCACAAAAGUGAUGGGUGCUAUACAGAAGCUGACCGGGGAUGGUA

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Structure

        10          20        30        40        50        60  
AAACCCCCGAAACCGAU--|    ACU     C       C      UU       UGAAUAA 
                   CUGUA   CACCU UCAUUUU GUGAUU  UGCAAUU       A
                   GACAU   GUGGG AGUGAAA CACUGA  ACGUUAA       C
AUGGUAGGGGCCAGUCGAA^    AUC     U       A      U-       AGGUUAA 
   120       110       100        90        80         70

Deep sequencing

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3' NTU

No

Motifs

No

Tissue expression

-

+

01	02	03	04	05	06	07	08	09	10	11	12	13	14

Star sequence

Dma-Mir-153_5p*

mirBase accession

None

Sequence

0- CUCAUUUUCGUGAUUUUUGCAAUU -24

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Mature sequence

Dma-Mir-153_3p

mirBase accession

None

Sequence

42- UUGCAUAGUCACAAAAGUGAUGG -65

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