MirGeneDB ID | Bta-Mir-153-P2 |
Family name |
MIR-153 (all species) |
Seed |
UGCAUAG |
Species |
Cow (Bos taurus) |
MiRBase ID |
bta-mir-153-1
|
Paralogues |
Bta-Mir-153-P1
|
Orthologues |
Aca-Mir-153-P2
Ami-Mir-153-P2
Asu-Mir-153
Bfl-Mir-153
Bla-Mir-153
Bpl-Mir-153
Cfa-Mir-153-P2
Cgi-Mir-153
Cin-Mir-153
Cli-Mir-153-P2
Cmi-Mir-153-P2
Cpi-Mir-153-P2
Cte-Mir-153
Dma-Mir-153
Dno-Mir-153-P2
Dpu-Mir-153
Dre-Mir-153-P2a
Dre-Mir-153-P2b
Gga-Mir-153-P2
Gja-Mir-153-P2
Gmo-Mir-153-P2a
Hsa-Mir-153-P2
Isc-Mir-153
Lan-Mir-153
Lch-Mir-153-P2
Lgi-Mir-153
Loc-Mir-153-P2
Mal-Mir-153-P2a
Mal-Mir-153-P2b
Mdo-Mir-153-P2
Mml-Mir-153-P2
Mun-Mir-153-P2
Npo-Mir-153
Oan-Mir-153-P2
Obi-Mir-153
Ovu-Mir-153
Pbv-Mir-153-P2
Pfl-Mir-153
Pma-Mir-153-o2
Pmi-Mir-153
Sha-Mir-153-P2
Sko-Mir-153
Sme-Mir-153
Spt-Mir-153-P2
Spu-Mir-153
Sto-Mir-153-P2
Tgu-Mir-153-P2
Tni-Mir-153-P2a
Tni-Mir-153-P2b
Xbo-Mir-153
Xla-Mir-153-P2c
Xla-Mir-153-P2d
Xtr-Mir-153-P2
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (GCF_002263795.1_ARS-UCD1.2_BTA) |
NC_037329.1: 107240966-107241025 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CUCUUCUCUCUCUCUCUCACGGCUGCCAGCGUCAUUUUUGUGAUCUGCAGCUAGUAUUCUCACUCCAGUUGCAUAGUCACAAAAGUGAUCACUGGCAGGUGUGGCCGCUGCAUGGAUGGG
Get precursor sequence
|
Structure | 10 20 30 40 50
CUCUUCUCUCUCUCUCUC G C- C-| AGUAUU
ACG CUGCCAG GUCAUUUUUGUGAU UGCAGCU C
UGU GACGGUC UAGUGAAAACACUG ACGUUGA U
GGGUAGGUACGUCGCCGG G AC AU^ CCUCAC
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Ad |
Cd |
Fe |
Bo |
Br |
Ce |
Co |
Co |
De |
He |
Hy |
Ir |
Ki |
La |
Lo |
No |
Op |
Or |
Pe |
Re |
Su |
Te |
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Star sequence |
Bta-Mir-153-P2_5p* |
mirBase accession | None |
Sequence |
0- GUCAUUUUUGUGAUCUGCAGCU -22
Get sequence
|
Mature sequence |
Bta-Mir-153-P2_3p |
mirBase accession | MIMAT0009239 |
Sequence |
38- UUGCAUAGUCACAAAAGUGAUC -60
Get sequence
|
Proposed targets |
TargetScanVert: bta-miR-153
|