MirGeneDB 2.1
MirGeneDB ID

Sme-Mir-153

Family name MIR-153 (all species)
Seed UGCAUAG
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-2163
Paralogues
Orthologues Aca-Mir-153-P1  Aca-Mir-153-P2  Ami-Mir-153-P1  Ami-Mir-153-P2  Asu-Mir-153  Bfl-Mir-153  Bge-Mir-153-P16  Bge-Mir-153-P17  Bla-Mir-153  Bpl-Mir-153  Bta-Mir-153-P1  Bta-Mir-153-P2  Cfa-Mir-153-P1  Cfa-Mir-153-P2  Cgi-Mir-153  Cin-Mir-153  Cli-Mir-153-P1  Cli-Mir-153-P2  Cmi-Mir-153-P1  Cmi-Mir-153-P2  Cmi-Mir-153-P4  Cpi-Mir-153-P1  Cpi-Mir-153-P2  Cpo-Mir-153-P1  Csc-Mir-153-P16  Csc-Mir-153-P17a  Csc-Mir-153-P17b  Cte-Mir-153  Dma-Mir-153  Dno-Mir-153-P1  Dno-Mir-153-P2  Dpu-Mir-153  Dre-Mir-153-P1a  Dre-Mir-153-P2a  Dre-Mir-153-P2b  Ebu-Mir-153-P5  Ebu-Mir-153-P6  Ebu-Mir-153-P7  Efe-Mir-153-P8  Efe-Mir-153-P9  Esc-Mir-153-P18a  Esc-Mir-153-P18b  Ete-Mir-153-P1  Gga-Mir-153-P1  Gga-Mir-153-P2  Gja-Mir-153-P1  Gja-Mir-153-P2  Gmo-Mir-153-P1a  Gmo-Mir-153-P1b  Gmo-Mir-153-P2a  Hsa-Mir-153-P1  Hsa-Mir-153-P2  Isc-Mir-153  Lan-Mir-153  Lch-Mir-153-P1  Lch-Mir-153-P2  Lgi-Mir-153  Loc-Mir-153-P1  Loc-Mir-153-P2  Lpo-Mir-153-P10  Lpo-Mir-153-P11  Lpo-Mir-153-P12  Lpo-Mir-153-P13  Lpo-Mir-153-P14  Lpo-Mir-153-P15  Mal-Mir-153-P1a  Mal-Mir-153-P1b  Mal-Mir-153-P2a  Mal-Mir-153-P2b  Mdo-Mir-153-P1  Mdo-Mir-153-P2  Mml-Mir-153-P1  Mml-Mir-153-P2  Mmu-Mir-153-P1  Mun-Mir-153-P1  Mun-Mir-153-P2  Npo-Mir-153  Oan-Mir-153-P1  Oan-Mir-153-P2  Obi-Mir-153  Ocu-Mir-153-P1  Ovu-Mir-153  Pbv-Mir-153-P1  Pbv-Mir-153-P2  Pfl-Mir-153  Pma-Mir-153-o1  Pma-Mir-153-o2  Pma-Mir-153-o3  Pmi-Mir-153  Rno-Mir-153-P1  Sha-Mir-153-P1  Sha-Mir-153-P2  Sko-Mir-153  Spt-Mir-153-P1  Spt-Mir-153-P2  Spu-Mir-153  Sto-Mir-153-P1  Sto-Mir-153-P2  Sto-Mir-153-P4  Tgu-Mir-153-P1  Tgu-Mir-153-P2  Tni-Mir-153-P1b  Tni-Mir-153-P2a  Tni-Mir-153-P2b  Xbo-Mir-153  Xla-Mir-153-P1c  Xla-Mir-153-P1d  Xla-Mir-153-P2c  Xla-Mir-153-P2d  Xtr-Mir-153-P1  Xtr-Mir-153-P2 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)		 NNSW01000044_dd_Smes_g4_44: 2086441-2086504 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUUAUUUUAUUACGAGAUUUUAUUUUCAUAACUUGAUAGAUAUAUGCAUCAACGAGAUUUGCUAUUAUUUUGUUGCAUAGUCUAUUAAGUUGGUCGAAAUGAUUUUAAUCGUCAAGUCGGUUU
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Structure
        10        20          30        40        50        60  
UUUUAUUUUAUUACGAGAUU-       CA-|            A      U  ACGAGAUUU 
                     UUAUUUU   UAACUUGAUAGAU UAUGCA CA         \
                     AGUAAAG   GUUGAAUUAUCUG AUACGU GU         G
UUUGGCUGAACUGCUAAUUUU       CUG^            -      U  UUUAUUAUC 
  120       110       100        90         80        70
Deep sequencing
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CommentThe templated 3' uridine gives the pre-miRNA a 3-nt offset so it is assumed that it is an NTU.
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Se Se Se Se Se Se Se Se Se Se Se Se Ne Wh Wh Wh
Star sequence

Sme-Mir-153_5p*
mirBase accessionMIMAT0012154
Sequence 
0- AACUUGAUAGAUAUAUGCAUCA -22
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Mature sequence

Sme-Mir-153_3p
mirBase accessionMIMAT0011257
Sequence 
43- UUGCAUAGUCUAUUAAGUUGG -64
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